Shewanella denitrificans: Sden_1192
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Entry
Sden_1192 CDS
T00344
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdn03009
]
Sden_1192
Enzymes [BR:
sdn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Sden_1192
Ribosome biogenesis [BR:
sdn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Sden_1192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
PCMT
TRM5-TYW2_MTfase
MTS
Methyltransf_11
Cons_hypoth95
Methyltransf_12
Methyltransf_32
UPF0020
Methyltransf_4
Ubie_methyltran
PrmA
Methyltransf_23
Methyltr_RsmB-F
Methyltransf_15
RrnaAD
FtsJ
CMAS
Motif
Other DBs
NCBI-ProteinID:
ABE54478
UniProt:
Q12PZ8
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All DBs
Position
1386242..1387648
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AA seq
468 aa
AA seq
DB search
MAQFFKEKANKSKQLSPKLSLNVTQLDHLGAGMAQHQGKVVFIPQALPGERVSVQLTDQK
KSFAKAKLIKIEQQSPERADASCPHYGHCGGCDLQHLALDAQQNHKQQSLNELMVKFSGS
PVIDPQVQAAPLVSPPWHYRRRARLATYFNNNDKSLKLGFRALSSKQIVPIKQCPVLAEP
LSALINPFSLLLARLKAKASLGHLELTQADNGTFAVLRVTKVLPAADIRALASFALTQGI
NLLLQDDSGALTDVMTMAPAEDEGATQVEQSALTLPEYALSQGQVSCQFTPGNFVQVNAE
VNQRMVEQAVNWLDLQVGERVLDLFCGVGNFSLALANRGQNLDGLEVIGVEGVPEMVQQA
RENAKRNNLANLSFYHADLSADLSNEKWLGKIDKLLLDPARAGAFESLQWLQKMKPKKVV
YVSCNPASLARDSSVLLSQGYQLKQLSMIDMFPQTHHIEAMALFEIAT
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattttttaaagaaaaagcgaataaatctaaacagctatcccctaagcttagt
ctaaacgtcactcaacttgatcatcttggcgcaggcatggcccaacatcagggtaaagtg
gtatttattcctcaggctttgccaggtgagcgggtatcggtgcaattgaccgaccaaaaa
aagagttttgctaaggcgaaactgattaaaatagagcagcaaagccctgagcgggccgat
gccagctgcccccattacggtcactgcggcgggtgtgatttgcagcacttagccctggat
gcccagcaaaatcataagcagcagagcttaaatgaattgatggtgaagttttctggaagc
cctgttattgacccacaagtgcaagcagcacctttagtgtccccgccttggcattatcgc
cgccgcgcgcgtttagccacttactttaacaacaacgacaagagcttaaaattgggcttt
cgcgccctcagtagcaagcaaatcgtacccattaaacaatgccccgtattggccgagcca
ttatcggcactgatcaacccgttttccctattactggcgcgccttaaagccaaggcaagt
ctaggccatctcgaattaacccaagccgataacggcacctttgcggtattaagggtgact
aaagtgttgcctgcggccgacattcgggccttggcaagctttgccctaactcagggcatt
aatctgttgctgcaagatgacagcggcgccctaaccgatgtgatgactatggcgcctgct
gaagacgagggggctacccaagttgaacaatcagcactaaccttgccggagtatgctttg
agtcaaggccaagtcagttgccaatttaccccgggtaactttgtgcaggtcaatgccgag
gttaatcagcgcatggtggagcaagcggtcaattggcttgatcttcaagtgggagagcga
gtattagatttattctgcggcgtggggaatttcagtttagcgctggcaaaccgaggccag
aacctagatgggctagaagtcattggggtagaaggcgtgcccgaaatggtgcagcaagct
cgggagaacgccaagcgcaataatctggcgaacttaagcttttatcatgctgacttaagt
gctgacctttcaaatgaaaaatggcttgggaaaatcgataagctattattagaccccgcc
agagccggcgcgtttgaaagcttgcaatggctacagaaaatgaaacctaaaaaagtggtt
tatgtgtcttgtaacccagcaagcttagcccgtgactctagcgtgctgctcagccaaggt
taccagcttaagcagttgtccatgatagacatgttcccgcagacgcaccacattgaagct
atggcgctatttgaaattgccacttaa
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