Shewanella denitrificans: Sden_1268
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Entry
Sden_1268 CDS
T00344
Name
(GenBank) Exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Sden_1268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdn03400
]
Sden_1268
Enzymes [BR:
sdn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
Sden_1268
DNA repair and recombination proteins [BR:
sdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Sden_1268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ABE54554
UniProt:
Q12PS2
LinkDB
All DBs
Position
complement(1479711..1481051)
Genome browser
AA seq
446 aa
AA seq
DB search
MKAAKNNVYTVSRLNGEVRQILEGQIGKIWLNGEISNFSSPSSGHWYLTLKDTHSQIRCA
MFKGRNQSVNFRPVNGQQVLVKGAISVYEPRGDYQLLLESMLPAGDGLLAQEYEALKMKL
AAEGLFASETKRALPSNIQRIGIITSATGAALRDVLHVLQRRDASIEVVVYPTQVQGTSA
SDNICRAIELANKRLEVDVLLLTRGGGSLEDLWCFNNEMLAHSIYNSALPVVSAVGHEVD
TTISDYVADVRAPTPSAGAELLSQDKGNKAQKLALMLSRLAQGMRHYQLSQDKHFVNLQH
RLNQQDPKRRLQQLEQQFDEFQLRLDNAFKHRLSRLTLRHERLSAQLQRQSPEHKLRLAH
QALTHVSGRFDDAIKDTLGSAEQRLKQAVHQLEAMSPLATLSRGYSISSNANGKVITDAS
KVKVGDSLHTRLAKGQLVSTVIDVEM
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccgctaaaaacaatgtttataccgtatcacggctcaatggcgaagttcggcaa
attctcgagggtcagattggtaaaatctggctcaatggcgaaatctcaaatttttcatcc
ccaagttccggccactggtatttgaccctaaaagacacccattcacaaattcgctgcgcc
atgtttaaaggcagaaatcaaagtgtcaatttcaggccagttaacggccaacaagtatta
gtcaaaggggccattagcgtctatgagcctagaggcgattatcagctgctgctggaatcc
atgttgcctgccggagacggtctactggcccaagaatatgaagcgttgaaaatgaagctg
gcagcagaaggcttatttgccagtgagaccaaacgggccttgcccagtaatattcagcgc
atcggcattatcacctctgcaacaggggccgcattacgagacgtgctgcatgtactgcag
cgccgggatgcctccatcgaagtggtggtctaccccacccaagtgcaaggcaccagcgcc
agtgacaacatctgccgcgccatcgagcttgccaataagcgtttagaagtcgatgtgtta
ttactgacccgaggcggcggttcactggaagatctatggtgttttaacaatgaaatgctg
gcccacagcatttataactcagccctgcctgtggtgagcgccgttggtcatgaagtggat
accaccatcagtgattatgttgccgatgtacgcgcccctaccccctctgctggcgctgag
ttgttatctcaggataagggcaataaagcgcagaagttagccttgatgttatctcgttta
gcccaaggcatgcgccattatcaattaagccaagacaagcattttgtcaacttgcaacac
agactcaatcagcaagatcccaaacgccgtctgcaacaacttgagcagcaattcgatgag
tttcaattgcgcctagacaatgccttcaaacatagactgagtcgcctcacactgcgccat
gaacgcttgagcgcccaattgcagcgccaatcccctgaacataaattacgattggctcat
caagcgttaactcatgtcagtggccgctttgatgacgccatcaaagacaccctaggcagc
gctgagcagcggctaaagcaagccgttcaccaattggaagccatgagtccgcttgcgacc
ttaagccgcggctattcaatcagcagtaacgccaacggcaaagtgataacagatgccagt
aaggtgaaagtcggtgacagcctgcacacccgtctagccaaagggcaactggtgtcaacc
gtgatagacgttgagatgtaa
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