Shewanella denitrificans: Sden_1272
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Entry
Sden_1272 CDS
T00344
Name
(GenBank) Lytic transglycosylase, catalytic
KO
K18691
peptidoglycan lytic transglycosylase F [EC:
4.2.2.29
]
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sdn01011
]
Sden_1272
Enzymes [BR:
sdn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
Sden_1272
Peptidoglycan biosynthesis and degradation proteins [BR:
sdn01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
Sden_1272
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_3
SLT
Lysozyme_like
NAT
ABC2_membrane_3
Motif
Other DBs
NCBI-ProteinID:
ABE54558
UniProt:
Q12PR8
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All DBs
Position
complement(1485406..1486890)
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AA seq
494 aa
AA seq
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MIKYLYVILLGLLLSGCQPAEVVEIEASPKAQKRTVLKVGTLYGPQIYVNNSQGETGFDY
EMANRFADYLGVSLEMIPFTDRKQLFKALKDNDIDIIAAGIAKTPGRGEQFKMGPTLYKV
NQVLVYREGTPEPKDIGTLSGEITVMSNSSSVNTLTQLQKDYPELLWNQVNDKDNEELFA
LIAKGELNYTISDSNSLLINQRFLPELRAGMILEEKIEVVWLLPPKNSDKLMSQLLAFWH
NEQRAGTLEHLNEKYFGHVKRFDYVDTRAFIRAIDNVLPAYRSLFETYSGELDWRKLAAA
SYQESHWNPNARSKTGVRGMMMLTQPTASYVGVSDRTDAEQSIRGGAIYLKDMIERLPES
ISDSQRIWFALAAYNIGMGHVEDARRLAVSMDMDPDAWRDVKKVLPLLQQRKYYKQTRYG
YARGSQAVHYVDSIRRYYDTLVWVDNQTKKMEVIEAPVEILADKVDANDNIKQSLASDSK
TNNTLKPKLGAGQP
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgattaaatacttatatgtcattttattgggcctcttattgtctggctgccagccagca
gaggtcgttgagatagaggcaagccctaaagcccaaaaacgtaccgtgctaaaagtcggt
accttgtatgggccgcagatctacgtcaacaactcccaaggtgaaacagggtttgactac
gagatggccaatcgctttgccgactacttaggtgtgtcgttagagatgatcccctttacc
gaccgtaaacaactgttcaaagcccttaaagacaatgatattgatatcattgccgcgggt
attgccaaaacccctggcagaggcgagcaatttaaaatggggccgaccctttataaggta
aaccaagtcttggtctaccgtgaaggcaccccagagcctaaagacattggcaccttaagt
ggtgagatcactgtgatgtccaattcatcttcggttaatactttgactcagctgcaaaag
gactacccagagctgctgtggaaccaagtgaacgataaagacaatgaagagctattcgcc
ttgattgccaagggtgagcttaactacaccatttctgattccaacagtttattgatcaat
caaagattcttgcctgagctacgtgctgggatgattttggaagaaaaaattgaagtggtc
tggttactgccgcctaaaaacagcgacaagctcatgagccaattgctggcattttggcac
aatgagcaaagagcaggtaccttagagcacttaaatgaaaagtattttggccatgttaaa
cgcttcgattacgtggacacccgtgcctttattcgcgccatagacaatgtacttccggcc
tatcgcagtttatttgaaacctactcaggtgagctggattggcgcaagctagccgcggcc
agctatcaggagtcccattggaaccccaacgcgcgctcaaaaactggggtcagaggcatg
atgatgctgacccaacccaccgcaagctatgtgggcgtcagtgacagaacagatgcagag
caaagcatacgtggcggcgccatctatctgaaagatatgatagaaaggcttcctgagtcc
atcagtgatagccaacgaatttggtttgccttagcggcttataatatcggcatgggtcat
gtagaagatgcacgtcgtcttgcggtctccatggacatggatcccgatgcatggcgtgat
gttaaaaaggtgctgccactgttgcagcagagaaaatactataaacagactcgctatggt
tacgccagaggcagccaagccgtacattatgtggatagcatacgccgttattatgacacc
ttagtttgggtcgataatcagactaaaaagatggaagtcatagaagcaccggttgaaata
ttggcggataaagttgatgctaatgataacattaaacagtcactggcaagcgacagtaaa
accaataacacccttaagcctaagttgggtgcaggccagccctag
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