Shewanella denitrificans: Sden_1343
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Entry
Sden_1343 CDS
T00344
Name
(GenBank) RNA polymerase sigma factor, FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
sdn
Shewanella denitrificans
Pathway
sdn02020
Two-component system
sdn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Sden_1343
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sden_1343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdn03021
]
Sden_1343
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
sdn02035
]
Sden_1343
Transcription machinery [BR:
sdn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sden_1343
Bacterial motility proteins [BR:
sdn02035
]
Flagellar system
Flagellar assembly proteins
Stator
Sden_1343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
UPF0122
HTH_23
HTH_10
GerE
TcdB_toxin_midC
Pterin_bind
Motif
Other DBs
NCBI-ProteinID:
ABE54629
UniProt:
Q12PJ7
LinkDB
All DBs
Position
1563788..1564507
Genome browser
AA seq
239 aa
AA seq
DB search
MNKAAAYTQFDDKSSVIEQYAPLVKKIAHHMLARLPASVQLDDLLQAGMMGLLEAASKFD
GTKGAKFETFAGIRIRGAMIDEIRRGDWVPRSVHRNQRRVAQVIDELEQHFGRDARDTEI
AEKLDMSLDEYHHILNDVSVGKIIGIEDLGVSQDVIITEETSMDESFDELVETQFQSALV
EAIKTLPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKAKLKHWTQT
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaagccgcagcgtatactcagttcgatgataagtcgtccgttattgaacagtat
gctccgttggtgaaaaaaattgctcatcatatgcttgcacggcttccagcatctgtacaa
cttgatgacttattacaagctggaatgatgggactgctggaagcggcgtcaaaatttgat
ggtaccaagggcgctaagtttgaaaccttcgctggtattcgaattcgtggtgccatgatt
gatgaaattcgccgaggagactgggttccacgctcagtgcatcgcaatcaaaggcgcgtg
gctcaggtgattgatgagctagaacaacactttggaagagatgctcgtgacacagaaatt
gcagaaaaacttgatatgtcgctcgatgagtaccatcatatcttaaatgatgtttctgtt
ggaaaaatcataggcatagaagatctgggtgtatcacaggatgtgattattaccgaagaa
acgtcaatggatgaatcctttgatgaattagttgaaactcaattccaatcagcgctggtt
gaagcaattaaaacattgccagaaagagatgctttagtgttatcgctttactatgatgaa
gcactgaatttaaaagaaattggcgccatacttgaggtgagcgaatctagggttagtcag
atattaagtcaggctatgcttagattaaaagcaaaactcaagcattggacacaaacataa
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