Shewanella denitrificans: Sden_1486
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Entry
Sden_1486 CDS
T00344
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdn03016
]
Sden_1486
Enzymes [BR:
sdn01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
Sden_1486
Transfer RNA biogenesis [BR:
sdn03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Sden_1486
Prokaryotic type
Sden_1486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-ProteinID:
ABE54771
UniProt:
Q12P55
LinkDB
All DBs
Position
1723719..1724504
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AA seq
261 aa
AA seq
DB search
MRVALGIEYDGSSYCGWQRQVEVDSVQAQLEKALSLIANEPIEVVCAGRTDAGVHGTGQV
VHFDTTVIRPDSAWTLGVNANLPDTIAVRWVKLVDDSFHARFSATARRYRYVIYNHKFRP
GLLRHGLSHYHGDIDETLMHQAAQQLLGEHDFTSFRAMQCQSKSPFRSVHEVNVTRQGMY
IMVDIKANAFLHHMVRNIVGSLLEIGLGNQPLNWISKLIAVKDRRQAAATAKPNGLYLVD
VTYPEEFAIPKLALGPLFMLD
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgcgggttgcgttaggtatcgaatatgatggcagtagttattgtggttggcagcgccaa
gtagaagtggattcggtacaagctcagcttgaaaaagccctttctttaatagccaatgag
cctatcgaggttgtgtgtgcagggcgcaccgacgcaggtgtacatggcacgggtcaagtg
gtgcattttgataccacagttatcagaccagactcagcatggacactaggggttaatgct
aatttacctgacaccattgcggttcgctgggttaagcttgtcgatgacagctttcatgcg
cgcttttcggcaaccgcgagacgctaccgttatgtgatttataaccataagtttcgccca
ggattgttgcgccatggcctgagtcattaccatggagatatcgatgaaaccttaatgcat
caagcggcgcagcagctgctaggtgagcatgattttaccagttttagggcgatgcagtgc
cagtctaaaagcccatttcgcagcgttcatgaagtgaatgtaacccgccaaggcatgtat
attatggtggacattaaggctaatgcctttttgcatcatatggtgcgcaatattgtgggt
agtttgctagaaattggccttggtaatcagccgcttaattggatctctaagttaattgca
gttaaagacagaaggcaagcggcagcaacggctaaacccaatggtttgtatttggttgat
gttacttatccagaagagttcgctattcctaaactcgccctagggcctttgtttatgttg
gattag
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