Shewanella denitrificans: Sden_1625
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Entry
Sden_1625 CDS
T00344
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn00061
Fatty acid biosynthesis
sdn00071
Fatty acid degradation
sdn01100
Metabolic pathways
sdn01212
Fatty acid metabolism
sdn02024
Quorum sensing
sdn04146
Peroxisome
Module
sdn_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Sden_1625
00071 Fatty acid degradation
Sden_1625
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Sden_1625
09145 Cellular community - prokaryotes
02024 Quorum sensing
Sden_1625
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sdn01004
]
Sden_1625
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sdn04147
]
Sden_1625
Enzymes [BR:
sdn01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Sden_1625
Lipid biosynthesis proteins [BR:
sdn01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Sden_1625
Exosome [BR:
sdn04147
]
Exosomal proteins
Exosomal proteins of breast milk
Sden_1625
Exosomal proteins of breast cancer cells
Sden_1625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Pept_S41_N
Motif
Other DBs
NCBI-ProteinID:
ABE54909
UniProt:
Q12NR7
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All DBs
Position
1888857..1890530
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AA seq
557 aa
AA seq
DB search
MIKPWINNLPAEVPAEIDPEQFSSLVTMFEAAVAKYADQPAFINMGATITYRKLEERSRA
FAAYLQNELKLEKGDRVALMMPNLLQYPIALFGVLRAGMVVVNVNPLYTPRELKHQLVDS
GAKAIVVVSNFAKTLEEVVNETPVESVIVTRLGDQLSAPKRTLVNFVVKYIKKLVPKYDL
PHALSFRDSLTQGRRLQYIKPEINSEDLAFLQYTGGTTGVSKGAMLTHKNVVSNVLQANG
AYSPALNDGTEFVVTALPLYHIFALTVNCLLFMHKGSQNLLITNPRDIPAFVGELKKYPF
TALTGVNTLFNALVNNTDFTSLDFSRLKLSIGGGMAVQKAVADKWQSITKTRLLEGYGLT
EASPLLTCCPYNLSGYNGSIGFPAPSTLIQIRDEDGNALAQGERGELFAKGPQVMQGYWQ
RPEETAKVIDSDGWLSTGDIGYMDEKGFFYIVDRKKDMILVSGFNVFPNEVEDVVALHPK
VIEVAAVGVPNDASGELVKIFVVAKDKSLTEDELIKHCRHHLTGYKVPKLVEFRDELPKT
NVGKILRRQLRDEAKTA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtgattaagccttggattaataacttgccagcagaggttccagcggaaattgaccctgag
caattttcgtcattagtaaccatgttcgaagccgcagtggctaaatacgccgatcagcct
gcgtttatcaatatgggtgcgactatcacctaccgcaaacttgaagagcgcagccgcgct
tttgccgcttatttgcaaaatgaattaaagttagagaagggcgatcgcgtcgccttgatg
atgcctaatttattgcaataccccatcgccttgtttggcgtgcttcgcgctggcatggtg
gtggtgaacgttaaccccttgtataccccgagagagttaaaacaccagctggtggactca
ggcgctaaagccatagtggtggtatcaaactttgctaagaccttggaagaagtggttaat
gaaaccccggtcgagtctgtgatcgttactcgtctaggggatcagctcagcgcgccaaaa
cgcactttagtgaactttgtggttaaatacatcaagaagttagtgcctaagtatgattta
ccccatgcactgtcttttagagattcattaactcaaggccgcagactgcaatacatcaag
cctgagataaatagtgaagacttggcctttttgcagtacacaggcgggacgactggggtg
tctaaaggcgccatgctgacgcacaaaaatgtggtgagcaatgtgctgcaagccaatggg
gcttattcgcctgcattgaacgatggcacagaattcgttgttacagcattgcccttgtat
catatctttgcgctaacagttaactgtttgttatttatgcataaaggtagccagaatcta
ttaattaccaacccaagagacattccggcattcgtgggcgagttaaagaaataccccttt
accgcgttaactggggtgaacaccttatttaatgcgctggtgaataacacagactttacc
agtttagatttttcacggcttaagctgtcaattggcggcggcatggcggtacaaaaagcg
gttgccgataaatggcaatcgatcaccaaaacccgtttattggaaggttatggtctaact
gaagcctctcccttgctgacatgctgtccgtataacttaagcggatacaacggctctatt
ggtttccctgcgccttcgaccttaattcaaattcgtgatgaagacggtaatgcattggct
caaggcgagcgcggcgagctgtttgcaaaaggccctcaggtgatgcaaggttattggcag
cgccctgaagaaaccgctaaagtcatagacagcgatggctggttatctacgggtgacata
ggttacatggatgaaaaaggcttcttttatattgtcgatcgtaaaaaagacatgatctta
gtctcaggctttaatgtgttccccaatgaagtggaagatgtggttgccttacaccctaag
gtaattgaagtggccgcagtcggtgtgcccaatgatgctagcggcgaattagtgaagatt
tttgtggtggctaaagataagtcattaacagaagatgagttaattaagcattgccgtcac
catttaacgggctataaggtacctaaactggtagaattcagagacgaattaccaaaaacc
aatgtgggtaaaattttacgccgtcagctcagagatgaagcgaaaacagcataa
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