Shewanella denitrificans: Sden_1626
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Entry
Sden_1626 CDS
T00344
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdn03016
]
Sden_1626
Enzymes [BR:
sdn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Sden_1626
Transfer RNA biogenesis [BR:
sdn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Sden_1626
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABE54910
UniProt:
Q12NR6
LinkDB
All DBs
Position
1890635..1891750
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AA seq
371 aa
AA seq
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MLAFEYISDDASLRALVEQYQSSPLLVLDTEFVRTRTYYARLGLIQAFDGKTLALIDPVA
IEDLSPFWQLLTAPHITKLVHSCSEDLEVFAHYGHCQPAPLFDSQIAASLAGLGHGLGYA
KLVQECLSVEIDKGESRTDWMKRPLTDAQLQYAANDVFYLYKLYPLLLEKLNANGRVEWL
LEEGQRMTQDRLSLPDGESAYIKVKNAFQLLPEQLAYLKVLGKWRLEKALAKDLALGFVV
KDHALIALAKKQPSSVAELNRMTELTEQEKRIHGRDLIRVLTTADLDNLPEQLDVIALKP
GYKSTFKEIKNTITSLCEQADIPVEFLGSKRLIHELLLWLWHGKTTSMPLLLTGWRGAIV
ADALAEVSFSQ
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
ttgttagctttcgaatatatcagtgatgatgccagccttcgggcacttgttgagcagtat
caatccagccctctattagtgttagatacagaatttgtgcgtactcgtacctattacgct
aggctaggcttgatccaagccttcgatggcaagaccttagccttaatcgatccggtggct
attgaagatttatcgccgttctggcaattgttaaccgcacctcatatcactaagttagtg
cattcttgcagcgaagatttagaagtctttgctcattacggtcattgccaacccgcgccg
ctgtttgacagtcaaatcgccgcaagtttagcgggattaggtcatgggttaggttatgct
aagttggtgcaagagtgcttaagtgtcgagatagacaaaggcgagtcacgtaccgattgg
atgaagcgtccactgactgatgcgcagctgcaatatgccgctaatgacgtattctattta
tataaactctatcctttattgcttgaaaagcttaacgccaatggcagagtcgagtggctg
cttgaagaaggccagcgtatgacacaagacagattatctctgccagatggtgaaagcgct
tatatcaaggtgaagaatgccttccagttgttgccagaacaattagcttacttgaaagta
cttgggaaatggcggttagagaaagccttagcgaaagatttagccttaggctttgtggtg
aaagaccatgcgttaattgccttagccaagaagcagcccagtagtgttgctgagcttaat
cgcatgacagagctgaccgagcaagaaaaacgtattcacggccgcgatcttattcgtgtt
ttgacgacggcagatcttgataatttacctgaacagctcgatgtcatcgcattgaaacct
ggctataagtcgacctttaaagagattaaaaacaccattaccagcttgtgtgaacaggcg
gatatcccagtggagtttttaggctctaagcgcctaattcatgagcttttgctgtggttg
tggcatggtaaaacgacatcaatgccattattgctgacaggttggcgcggggctatcgtg
gctgatgcgctagcagaggttagtttctcgcaataa
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