Shewanella denitrificans: Sden_1841
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Entry
Sden_1841 CDS
T00344
Name
(GenBank) PP-loop
KO
K14058
tRNA 2-thiocytidine biosynthesis protein TtcA
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdn03016
]
Sden_1841
Transfer RNA biogenesis [BR:
sdn03016
]
Prokaryotic type
tRNA modification factors
Thiolation factors
Sden_1841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP_bind_3
EF-hand_6
KH_PARP14_8
Motif
Other DBs
NCBI-ProteinID:
ABE55125
UniProt:
Q12N51
LinkDB
All DBs
Position
complement(2167797..2168768)
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AA seq
323 aa
AA seq
DB search
MSDIVVDDFSEKQAARLNKLSKRLHREVGKAIADYQMIEEGDRIMCCLSGGKDSYAMLDI
LLNLQKRAPISFEIVAVNLDQKQPGFPEHILPAYLDNLGVAYHILEKDTYSIVKEKIPEG
KTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFLNMFFAGKMKAMPPKLLSD
DGANMVIRPLAYCREKDIAEYAKFKEFPIIPCNLCGSQENLKRGAVKDMLKQWDKHHPGR
IESIFTAMQNTSPSQGVDREQFDFAGLTRDPDAPMRGDVAESDLPAFDFLDTSNSGHIDL
DAAKARSDLLSQQRIDIVSSYKP
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatatagtggtagatgatttttccgaaaagcaggcggcacgcctcaacaaatta
agcaaacgcttgcaccgtgaagtaggcaaggctatcgccgattaccagatgatagaagaa
ggcgatcgcatcatgtgttgcctcagtggcggcaaagacagctacgctatgctggatatc
ttgcttaatttgcaaaaaagagcgccaatctcatttgaaattgtggcggtcaacctagat
caaaagcaacccggcttccctgagcatatcttgcctgcctatctcgataatttaggtgtg
gcataccatattcttgaaaaagacacttactctatcgtcaaagagaagatccccgaaggc
aagacgacctgctccctttgctctcgtctgcgtcgtggtaccttatacggcttcgcccag
cgcatcggtgccaccaaaattgccttaggtcatcacagagatgacatcatagaaacgcta
ttcttaaacatgtttttcgcgggcaagatgaaagccatgccgcctaagctcttgtctgat
gatggtgccaacatggtgatccgtccactggcctattgccgtgaaaaagacattgccgaa
tacgccaaattcaaagaattccctatcattccttgtaacttatgtggctctcaggaaaat
ttaaaacgcggtgcagtcaaagacatgcttaagcagtgggacaagcatcacccaggccgc
atcgagtccatcttcactgcgatgcaaaacacttcgccatcccaaggtgtggatcgtgaa
caattcgactttgctggccttactcgtgatccagatgcccccatgcgcggtgacgtggca
gaatcagacttacctgcgtttgatttcttagacaccagcaattcaggccacatagatttg
gacgccgctaaagcgcgctcagacctgttaagccagcaacgcatagacatagtcagtagc
tacaagccctag
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