Shewanella denitrificans: Sden_1970
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Entry
Sden_1970 CDS
T00344
Name
(GenBank) sigma-54 factor, interaction region
KO
K12266
anaerobic nitric oxide reductase transcription regulator
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdn03000
]
Sden_1970
Transcription factors [BR:
sdn03000
]
Prokaryotic type
Helix-turn-helix
Other families
Sden_1970
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
AAA_5
GAF_2
Mg_chelatase
AAA
AAA_2
AAA_16
GAF_3
AAA_19
AAA_3
HTH_8
Motif
Other DBs
NCBI-ProteinID:
ABE55253
UniProt:
Q12MS3
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Position
2334564..2336180
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AA seq
538 aa
AA seq
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MLEQTLLDIALDLSQSLPKKALYQRFMTAVNQVMPCDAVALLEYQGHELVPVAVDGLLPE
VLGMGFSPEDHPRLQAIMASKQPIRFNADSELADPYDGYLVIDPKRVLDVHACIGCSLFV
EGRLVGVLTLDALNVGAFDAIDDITIATLAALAAATIRNVNLLNQLDRQQYKLDDNDSVF
KQKPLKKSDFIGETPCMQALKDDIRIVANSELSVIIGGETGVGKELVARSLHAQSKRRAQ
ALVQVNCAALPDTLAESELFGHSKGAFTGAAKDRMGKFELAHQGTLFLDEVGELSLELQA
KLLRVIQEGEIQRIGLDRNIHVDVRIIAASNRNLLQRVKEGLFREDLYHRLCVYPLNVPP
LRERQDDIPLLCGNILTNLKHKIGLSSAKTVRLTQAAMQKLQGYPWPGNVRELQHVLMRA
ALKASAEAKGITVIQLHHLTFACEPMSQGLTELTAFNSNSPDSNPSTSDETFAAANREEK
VEPPVISRSFNDRVADFQRQVIRQSLDDNSQVWAKAARQLQLDRGNLHRQAKRLGLIP
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgctagagcaaacgttactggatatcgctttagatcttagccaaagcctgcctaaaaaa
gccctctatcagcgctttatgacagccgttaaccaagtcatgccctgtgatgcggtagcc
ctacttgaatatcaaggccatgaattagtgcccgtcgccgtggatggcctgctgcccgaa
gtgctgggcatgggattttcccctgaggaccaccctagattgcaagccattatggcttcc
aagcaacctattcgctttaacgccgactctgaacttgccgacccttatgatggctacttg
gtcatagatcctaaacgtgtactcgatgttcatgcctgcataggttgcagcctctttgtc
gaaggcaggctcgttggggtactcaccttagatgcgctcaatgtgggcgccttcgatgcc
atagacgatattactatcgcaaccctagcagcccttgccgccgcgaccatacgtaacgtt
aacttgctcaatcagttggaccgccagcagtataagcttgatgacaatgacagtgtattt
aagcaaaagccgttaaaaaagtctgacttcatcggtgagaccccctgcatgcaggccctt
aaagacgatattcgcattgtggcaaactccgaattatctgtgatcattggcggtgaaacc
ggtgtggggaaggagctggtggctcgcagcctgcacgcacaatctaaacgccgagcccaa
gccttagtgcaagtcaattgcgccgccctgcccgataccttggcagagagcgagttattt
ggtcacagtaaaggtgccttcactggcgccgccaaagacagaatgggcaaatttgagctg
gcccatcaaggcacactgtttctcgatgaagtgggtgagttatccttagaattacaggca
aaattattgcgtgtcattcaggaaggtgaaattcagcgcattggccttgaccgcaacatt
catgtggacgtgcgcatcatcgccgcctccaatcgcaatttacttcagcgagtaaaagaa
ggcctatttcgagaagacttgtaccacaggttatgtgtctatcccctcaatgtcccgccg
ctgcgagagcggcaagacgatatccccttgctgtgcggcaatatactcaccaaccttaaa
cataagattggcctaagcagcgccaagacagtgcgtttaacacaagccgccatgcaaaag
cttcagggctatccttggcccggcaacgtacgagaattacaacatgttttaatgcgcgcc
gccttgaaagccagcgccgaagctaaaggcattactgtcatccagctgcatcacttaacc
tttgcctgcgagcccatgagccaaggactcactgagttgaccgcgtttaactcaaactcg
cctgattctaatccatcaaccagtgacgagacgttcgctgccgcaaatcgagaagaaaaa
gtcgagccgccagtcattagtcgctccttcaacgatagggtggctgattttcagcgccaa
gtcatacgccaatcacttgatgacaatagccaagtctgggccaaagccgcgcggcagtta
cagttagaccgagggaatttgcatcgtcaagccaaacgtttagggctaattccttaa
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