Shewanella denitrificans: Sden_2018
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Entry
Sden_2018 CDS
T00344
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn03030
DNA replication
sdn03430
Mismatch repair
sdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sden_2018
03430 Mismatch repair
Sden_2018
03440 Homologous recombination
Sden_2018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdn03032
]
Sden_2018
03400 DNA repair and recombination proteins [BR:
sdn03400
]
Sden_2018
Enzymes [BR:
sdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sden_2018
DNA replication proteins [BR:
sdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Sden_2018
DNA repair and recombination proteins [BR:
sdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Sden_2018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
ABE55301
UniProt:
Q12MM5
LinkDB
All DBs
Position
complement(2394431..2395159)
Genome browser
AA seq
242 aa
AA seq
DB search
MTIISSASRQIILDTETTGMNQAGGAIYIGHRIIEIGCVEVINRRLTGRTYHQYINPGQS
IDPEAIAVHGITDERVANEPRFHQIAQEFIDFIQGAEIVAHNASFDVSFMDHEFSMLQPR
GPKTKDITDILDSLAIAKRLHPGQKNNLDALCKRYGIDNSRRTYHGALLDAEILADVYLL
MTGGQIKFNLSNEQAGQEAGGIQRLDPSGFNLKVIAASADELVLHESRLDLVQKSGKCLW
RG
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atgaccattatttccagcgcaagccgccaaatcattctcgataccgaaaccacaggtatg
aaccaagccggtggcgcgatttacatcggccataggatcatcgaaattggctgtgtagaa
gtgattaatcgccgtttgactggacgcacttaccatcaatacatcaatcccggccaaagc
atagatccagaagccatcgccgttcacggtattaccgatgaacgcgtcgccaatgaacct
agatttcatcaaattgcacaagagtttatcgactttattcaaggggctgaaatcgtcgct
cataatgccagcttcgatgtgagctttatggatcatgaattttccatgttgcagccaaga
gggccaaaaaccaaagacatcaccgatattctcgacagtttggccattgcgaaacgttta
catcctggacaaaagaataacctagatgccttgtgtaaacgctatggcatagataactct
cgacgcacttatcatggtgctttactcgatgccgaaattttggccgatgtttacttgttg
atgacagggggacaaatcaagttcaatttatccaacgagcaagcaggacaagaagcgggc
gggatccaacgacttgatccttctggatttaatcttaaagtgattgcggcatcagccgat
gaactagtattacacgagtctcgccttgatctggtgcagaaatcaggaaaatgcctctgg
agaggataa
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