Shewanella denitrificans: Sden_2302
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Entry
Sden_2302 CDS
T00344
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sden_2302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdn03019
]
Sden_2302
03009 Ribosome biogenesis [BR:
sdn03009
]
Sden_2302
Enzymes [BR:
sdn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Sden_2302
Messenger RNA biogenesis [BR:
sdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sden_2302
Ribosome biogenesis [BR:
sdn03009
]
Prokaryotic type
rRNA processing factors
Sden_2302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ABE55582
UniProt:
Q12LU4
LinkDB
All DBs
Position
2725306..2728614
Genome browser
AA seq
1102 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVQEGQQVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPNGMGLIVRTAGVGKEANEL
KWDLKVLQHHWDAIQEASQSQNAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEA
KQHIGLVRPDFVERVKLYESEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTVRSTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEERHGVEVYIIPDEHMKTP
DYRVVRHRTDDEMTESSYKRVEAPLSKLYEPRKLERAAAPQPALKGFAAPQKAPDAPVKA
TPVVQSTQPGLVTRIIAGISALFSSPSKSAEPKAETKSTASESRPANNTRPRRSDGRSDS
RNDNRRSRNDSDSRNRNDADKNKDTRGRNKKTDKERNVRDADDKRPARTDNRNDSRTDKA
LKQEQPVQEAVESVEVKTEKTPKQEAARERRQRRNMRRKVRIENEQVTQDADLTSTDTAE
AVKTDAALNTPAAQVEPTPTQDTDKGSHLDQSASAKKSDDSESRNSRTRRQPRKEKAEQV
TSESSDEASAPSVATAEIPASDAGTVEPKQAVDVNAEQDDDAKEGRDGQRRSRRSPRHLR
AAGQRRRRDEDDTSQGAVFSSVDELEKQLNDEQNAIAAQKLNGEAQQAAPSAVEQAEVSN
AANNIEINDKAEAATETVTETANAEVKTQDVDTVASPVAEEKVEAKVEATTPAETQANTD
ASIEVATEVKAEVKAEVTATAEPAVVTETNNTDEAIKATKEASNASAPMAKPAIPARKAV
AQVAPALAPSSTEASTVSSAAAKPTGGSRFGTMVSSDMTKPVVHERSQQDTPKGREYDNT
ATEDATPKSKLGNSASSGMHRP
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaatcaatgcaactcaatctgaagagttgcgcgtagccctagttgat
gggcaacaactgtatgatttggatattgaaagcccaggtcacgaacagaaaaaatcaaac
atctacaaaggtaaaattacccgtgtagaaccctctctagaagcggcttttgtggactat
ggcgctgaccgtcacggtttcttgcccctcaaagaaattgcccgcgaatatttcccaaaa
ggttattcattccaaggtcgtcctaacatcaaagaagtggtgcaggaaggtcaacaagtt
atcgttcaaatcgataaagaagagcgcggtaataaaggtgcggcacttaccacctttatc
agtttagcgggttcttatttggtattaatgcctaacaaccctcgtgctggcggcatatct
cgtcgtatcgaaggtgatgagcgtaccgagcttaaagaagccatggctgatcttgaagtg
ccaaacggcatgggccttatcgtgcgcaccgccggcgttggcaaagaagccaatgagctt
aagtgggacttaaaagtacttcaacatcattgggatgctattcaagaagcatcccaatca
cagaatgctcctttccttattcatcaagaaagtaacgtcatagttcgcgctattcgcgac
tacttacgccgtgatgtgggcgaaatccttatcgatcatccccgtatttttgaagaagca
aaacaacacataggtttagtgcgtcctgatttcgttgagcgcgtaaagctttatgaatca
gaagtgccactatttactcacttccaaatcgaatctcagattgaatctgcattccaacgt
gaagtgcgcctgccatcgggcggctcaatcgtcattgacccaactgaagccttgacctct
atcgatatcaactcggcccgcgccactaaaggcggcgatatcgaagaaacagcacttaac
accaacctagaagctgccgatgaaattgcccgtcaattacgtctacgcgacttaggtggc
ctagtggttatcgattttatcgatatgaccccagttagacaccagcgtgaagttgaaaac
cgcatgcgtgatgctgtgcatcatgatcgtgctcgcgtgcaacttggccgcatttcacgt
tttggcttaatggaaatgtcgcgtcagcgtctgcgcccttctcttgaggaatcggcagca
cacatttgtccacgctgtcatggtcaaggtacggttcgtagtactgagtctctggcatta
tcgattttacgtttgatggaagaagaagccatcaaagaaaacacgtctcagatagaagcc
atagtgcctgttgatgtggccgccttcttattaaatgagaagcgcaaagctattcgcatc
acagaagagcgtcacggtgttgaagtgtacatcatccctgatgaacacatgaaaacgcca
gattaccgcgttgtgcgtcacagaactgatgacgaaatgacagaatctagctataagcgt
gttgaagccccgctatccaagctttatgaaccacgtaaacttgaacgcgcagctgcgccg
caacctgcacttaaagggtttgctgcaccgcaaaaagcccctgatgcccctgtaaaagca
accccagtagttcaaagcactcaaccgggtttagttacccgcatcatagccggcattagc
gccctgtttagctcaccaagcaagagcgcggagcccaaagctgaaactaaaagcaccgca
agcgaaagccgtcctgccaataacactcgtcctcgccgcagtgatggtcgcagtgatagc
cgcaacgacaaccgtcgcagccgcaatgatagcgacagccgcaaccgtaacgatgctgat
aagaacaaagacactcgtggccgcaataagaagactgataaagaacgtaacgttcgtgat
gcagacgacaagcgcccagcaagaactgataatcgtaacgatagccgcactgacaaggca
cttaagcaagagcagcctgttcaagaagccgttgaaagcgttgaagttaaaactgagaaa
acccctaagcaagaagcagcccgtgagcgtcgtcaacgccgcaatatgcgtcgcaaggtg
cgtattgaaaacgagcaagtgactcaagatgctgatctaacatcgactgacactgcagaa
gctgtcaaaaccgatgcagcgcttaacactccagctgcacaagtagagccgacgcctacg
caagatacagacaagggttcacaccttgaccagtctgccagcgccaagaaaagcgatgat
tcagaaagcagaaactcacgtactcgccgtcaacctcgtaaagagaaagccgagcaagtc
accagtgagtcaagtgatgaagcttcagctccttcggtagcgactgctgaaatcccagcg
agcgatgctggaacggttgaacctaagcaagctgtagatgtcaatgctgagcaagatgat
gacgctaaagaaggccgtgatggtcaacgccgtagccgtcgtagcccacgtcatcttcgc
gcagcaggccaacgccgtcgccgtgatgaagatgataccagccaaggcgcggtattctca
tcggttgatgagcttgaaaagcagctcaatgacgaacaaaatgccattgctgcccaaaag
ctcaatggtgaagcccagcaagctgcaccaagcgctgttgagcaggctgaagtaagcaat
gcagcaaacaacatcgagatcaatgacaaagcagaagctgccactgaaacagtgactgag
acagcgaacgctgaagtaaagactcaggatgtcgacactgtagcaagcccagtagcagaa
gagaaagttgaagctaaagttgaagcaacgacgccagctgaaactcaggctaatacagat
gcgtctattgaagtcgccactgaagttaaggctgaagttaaggctgaagtaactgcgacc
gcagaaccagcagttgtcactgaaaccaataacactgatgaagctattaaagcgacgaaa
gaggcctctaatgcctcggcacctatggctaagcctgcgattcctgcgcgtaaagccgtg
gcgcaagttgctccagctctggcaccttcaagcacagaagcaagtacggtaagcagtgcc
gctgctaagcctactggcggcagccgcttcggtactatggtcagttcagatatgactaaa
cctgttgttcatgaaagatcacagcaggatacgccaaagggccgtgaatacgacaataca
gctaccgaagacgcaacacctaagagtaaattaggtaatagtgcatcatcgggtatgcac
agaccgtaa
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