Shewanella denitrificans: Sden_2338
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Entry
Sden_2338 CDS
T00344
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdn03000
]
Sden_2338
Transcription factors [BR:
sdn03000
]
Prokaryotic type
Helix-turn-helix
Other families
Sden_2338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
GAF
HTH_8
AAA_2
HTH_30
AAA_5
Mg_chelatase
AAA_3
HTH_7
HTH_22
PAS_4
AAA_22
AAA_7
nSTAND6
HTH_5
PAR1
AAA_14
ANT
RsgA_GTPase
PyrBI_leader
Mga
HTH_29
Motif
Other DBs
NCBI-ProteinID:
ABE55618
UniProt:
Q12LQ8
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Position
complement(2768302..2770140)
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AA seq
612 aa
AA seq
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MTAKTPSLLQGSSHWLTDSWQRSSLAGLEQTHLPEYHKLDPVSLQQKQADHSVLIRLVET
QALPLFYQVMAHSQSRLILSASDGYVLKHWGLSKYSDKLANIALDEGVSWLEENQGTNAI
GTALKARQLVSVIGEQHFFAKHRFMSCTASPIFSPSGELIAALDITSEQQVHSQQTLLLI
SSLAQLIETALLCQLPDSHYRVDLATQPHLFGSLWQGIAVADSQGKLLGFNPMAKHLLQS
MQVGDSLTQHIGDRWQRERHSQHKMLHLKTQQVEKQPLKKSAPSQTANKLGLKFKDPQLE
QAWQQANKVLTRQIPLLICGETGVGKEHFVKQLHSQSDRHAKPLVAINCAAIPHDLVEAE
LFGYQAGAYTGANKQGFMGKIRQAHEGFLFLDEIGDMPLMVQTRLLRVLQEREVVPIGSN
KAIPVDIQLVAASHGDLLSKVASGEFRQDLFYRLNGLQIRLPALRDRQDKLRIIEKLHGK
YRLGEQGMCPQLLGLLLAYSWPGNLRELDNMMQVACLMAEGERQLTFDKLPSQIQVQLQT
CATAVKQHGFSPVIETSHTELKPKCRQNLAQQVEAEIMAAFLDADSNVSQCAKNLGISRN
SLYRKLRKLGVR
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgacagctaaaacaccgtctttgctgcaaggaagttctcattggctaaccgattcttgg
caaagaagcagcttggctggcttagagcagactcatctccctgaatatcacaagctcgac
cctgtgagtctgcagcaaaaacaagccgatcactctgtgcttattcgcttagtggaaacc
caagccttgccgctgttttatcaagtcatggcccacagccaaagccgccttattctgtca
gctagtgatggttatgtgcttaagcattgggggctgtcgaaatactcagacaagcttgcg
aatatcgccttagatgaaggagtgagttggttagaagaaaaccaaggcaccaatgccata
ggcacagcgcttaaggcgaggcagttggtgtctgtgattggcgaacagcacttttttgcc
aagcacagattcatgagctgtacggctagcccgatattttctccctccggcgaattaatt
gcggcgctagatattaccagcgaacaacaagtgcacagtcagcaaaccttattgttgatt
tcaagtttggcccaactcatagaaaccgccttattatgccagctccctgatagccattat
cgggtagacttagccacccagccgcatttgtttggctccttgtggcaagggatagcagtg
gctgacagtcaaggtaaattattgggttttaaccccatggcgaagcatttattgcagagc
atgcaagtgggggactctctgactcagcacattggcgatcgttggcagcgagagcggcat
tcacagcacaagatgctgcaccttaaaactcagcaagtagaaaaacagccactcaaaaag
tcagccccttcgcagacagcaaataaactcgggcttaaatttaaagaccctcaattagaa
caagcctggcaacaggccaataaagtgttaactcgtcaaatcccattacttatttgcggc
gaaactggagtgggcaaagagcattttgttaaacaacttcacagtcagagtgaccgtcac
gctaagcccttagttgcgataaactgcgcggcgattcctcacgacttagtggaggctgaa
ttgtttggctatcaagctggcgcttacaccggcgccaacaagcaagggtttatggggaaa
attcgacaagcccatgaaggtttcttatttctcgatgagattggtgatatgccattgatg
gtacaaactcggttactgcgggttttgcaggaacgtgaagtggtgcccattggttccaac
aaggctatccctgtggatattcaattggtggccgcaagtcatggcgatctattgtcaaaa
gtggcaagtggtgaatttagacaagacttgttttatcgcttaaatggcttacagataaga
ttacccgccctaagagacaggcaagataagctgaggatcattgagaagcttcatggtaaa
taccgtctgggtgagcaaggcatgtgtccgcaactgcttgggcttttgttagcttattct
tggcctggtaacctcagggagctggataatatgatgcaagtggcgtgtttgatggcagaa
ggtgagcgacaactcacgtttgataaattaccttcgcagatccaagttcagttgcagacg
tgtgccactgcggtgaaacagcatggattttcgcctgttatagaaacaagtcataccgag
cttaagcccaagtgccgccagaatttagctcagcaggtagaggcagaaatcatggcggca
tttctagacgcagactccaatgtcagtcagtgcgctaaaaatttgggcattagccgcaac
agcttgtatcgtaaactgagaaagcttggggtgagatga
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