Shewanella denitrificans: Sden_2505
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Entry
Sden_2505 CDS
T00344
Name
(GenBank) SMC protein-like protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdn03400
]
Sden_2505
DNA repair and recombination proteins [BR:
sdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Sden_2505
Archaeal homologous recombinant proteins
Sden_2505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
SMC_N
AAA_23
AAA_29
nSTAND3
AAA_21
ABC_tran
DUF1931
cobW
NTPase_1
AAA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABE55785
UniProt:
Q12L91
LinkDB
All DBs
Position
complement(2989291..2993088)
Genome browser
AA seq
1265 aa
AA seq
DB search
MKILSLRFKNINSLKDEWKIDFTLSPFKENGLFAITGPTGSGKTTILDAICLALYHRTPR
LSVISKSTNELMTRGTGSALAEVEFEVKGKAYRAFWSQRRSRDLADGNLQDAQVELAELE
SGVILASQIKQKTELVESITGLDFARFTRSMLLSQGDFAAFLNASANERAELLEELTGTE
IYSLISERVHLEFGEQKHRLNLLKVQLDSVKLLSAEEREAKLASALALKETLAQKQQQLL
ALVDCLTWCDAMQAQTQLVEQSEQGLQAAEEAIRDEKNQLQRLADSEPAQGLAPLFERKQ
QLSQQHQALDKQVAELGQQLVSAQQTLKELSEQQSAAATALIVEKQAQQALHHLIDTQVQ
PLEQKLAQSRFKLTQCQQALDKSRTTEDELNHELSAVQARKQDLTLEIKELSTLLSQYPQ
GQALGEQLSGWKTQVAQLIELEQQRGELDIQQRQLQQSSTLCKQNLETNQQQLTQAQQVQ
INASHLLAATTAQINELLSGREIHQLQQEYQQCLDSQHGRSELAKTFEQYRKLYATWLEL
TQKAADDALQTIELTSELAKVRLQWRDKNQQVKDVTGLLSQEKHISSLDAERAKLQPGEP
CALCGSIEHPLVSEYQGINVSDTEQRQQKLLQELEQLKLAGEGLNLALSKLELSWEHTQQ
QLTHCISEQQELRNHWHALFAQLGLSLNEFALPAPWRRASDGDKASINPGVNEAAYLEAL
ESQLRSFIVKATEEQHKLSECITQLSGMQNQEATELKALQQAEAQAQRLVSARDVLSAEQ
CNITQGIEEQIRRINRLEEQQQMLIQNLNTECGQFGVTLPARESSASEYQHWLNELSANL
QQWRLAQQQLILKQQQLEVLQQSSSSISQQLNKNRTQIETDKQQLMTIEAELKALNAERF
DCFGDKDIEHEKDQAEINKQQAENVNAALVSKQLEASTLENTIKTRLDSLNEQLTHLVTS
LTEHQQHWQNALDASPFSDEASFSAACLSQADRQALQTLKNELDTRLHQQQALAQQAKLG
LEKLQQRGLAAEYQLSLAPALRIEHGELEQLQQQLTQELWQIERVLTEDSEQQAAQGSLV
SQLEAAKQSYDDMAYLHALIGSQKGDKFRKFAQGLTLDHLVALANRQLGRLHGRYLLERK
GSDALELQVIDTWQGDALRDTRTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEGFG
TLDSETLDMALDALDNLNASGKMIGVISHIEAMKERIDVQIKVNKMNGLGISRLQSQYQY
QAVLE
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatccttagcctgcgctttaaaaacattaactcccttaaagatgagtggaaaatt
gattttaccctgtcgccattcaaagaaaatggcttgtttgccatcacgggccccacgggc
agcggtaaaaccaccattttagatgccatctgtttagccttgtatcacagaacgccaaga
ctgagtgtgatttctaaatccaccaatgagctgatgacccgtggtacaggtagcgcctta
gccgaagtggagtttgaagtaaaaggcaaggcttatcgcgccttttggagtcagcgccgt
tctcgagatcttgccgatggcaacctgcaagatgcacaggttgagcttgctgaactcgag
tctggggtgattcttgccagtcaaatcaaacaaaaaacagagttggtcgagtctattacc
gggcttgattttgcgcgattcacccgctctatgctgttatctcaaggggattttgctgcc
tttttaaatgccagtgccaacgagcgagccgagctactcgaagaattgaccggcactgag
atctacagcttaatctcggagcgggtgcatcttgagtttggcgaacaaaaacatcgtctt
aacctgctaaaagtgcaattggatagcgttaagttgttaagtgcagaagagcgtgaagca
aagcttgctagcgctttggcgttaaaagagactctggcacagaaacagcagcagttacta
gccttagttgattgccttacatggtgtgatgccatgcaggcacaaacgcagctggtagag
caaagcgagcaggggcttcaggctgcagaagaggccattagggatgaaaaaaatcagtta
caacgcctagcagacagtgaacctgcgcagggattagcgccattgtttgagagaaaacag
caactcagccagcagcatcaagcccttgataaacaggtcgcggagcttgggcagcaatta
gtgagcgcacagcaaaccctaaaagagctgagtgagcagcaaagcgcggcggctacagca
cttattgttgaaaaacaggcgcagcaagccctccatcatttaatagacacccaggttcag
cccttagagcaaaagctggcccagagccgatttaaattaactcagtgccaacaagccctt
gataaatctcgcaccactgaggatgaattaaatcatgagctatcggcggttcaagctcgc
aagcaggatttaacccttgaaattaaagagctttcaacattgcttagtcaatatccccaa
gggcaagccctcggtgagcagttaagcggttggaagacgcaagtcgcgcagttaattgaa
cttgaacagcagcgcggtgagcttgatattcagcaaaggcagttgcagcaatcctctacg
ctgtgcaaacaaaaccttgagactaaccagcagcaattaacgcaagcccagcaggtacaa
attaatgccagtcatttgctggcagcaacgacagcgcagataaatgaattgctcagtggc
cgtgagatacatcagctgcaacaagagtatcagcagtgtctcgatagccagcatgggcgc
agtgagctggcaaaaacattcgagcaatatcgcaagttgtacgccacttggcttgagtta
acccaaaaagcggctgatgacgctttgcaaacgattgagttaaccagcgagcttgctaag
gtgcgcctgcaatggcgtgataaaaatcagcaagtgaaagatgtcacagggcttttgtct
caggagaaacacattagctctctcgacgctgagcgggctaaattgcaacccggcgagcct
tgcgccctgtgtggctcaattgagcaccctttagtgagtgaatatcaaggcatcaatgtt
tctgacactgagcagcgtcagcaaaagctactacaagaattagagcaattaaaacttgca
ggtgaggggcttaatttagcgctatctaagcttgagctgtcttgggagcacacacagcag
caattaactcactgcatcagcgagcaacaagagttacgtaatcattggcacgctttattc
gcacaacttgggctttctctaaatgagtttgccctgccagcaccgtggcgtagagcaagt
gatggtgataaagcaagcatcaatcctggagtcaatgaagctgcctatttagaggctctt
gagagtcaattacgatcttttattgttaaggcaactgaggaacaacacaagctcagtgag
tgcataactcagctttcaggtatgcagaaccaagaggcgactgagcttaaagcgttgcag
caagcagaggctcaggctcaaaggctagtctcagcgcgagacgtactcagcgcggagcag
tgcaatatcactcagggcattgaggagcaaattcgccgaattaacaggcttgaagagcag
caacagatgctgatccaaaacctaaacactgaatgtggccaatttggcgttactttacca
gcacgggagagcagcgcttctgaatatcaacactggttaaatgagctcagtgctaattta
caacagtggcgcttggcgcagcagcaattaatcctaaaacagcaacagttagaggtttta
cagcaaagtagcagcagtatttcccagcagcttaataagaaccgcactcaaattgagact
gataagcagcagttgatgaccatagaagctgaacttaaggcgctgaatgccgagcggttt
gactgctttggtgacaaagatatagagcatgaaaaagaccaagcagaaattaacaaacag
caagccgaaaacgtaaatgcagcacttgtcagcaagcagctggaagccagtacgctagaa
aacaccatcaagacgcgtttagatagcttgaatgaacagctcactcaccttgtgacaagc
ttaactgagcatcaacaacattggcaaaatgccttagatgctagcccgtttagtgatgaa
gcaagctttagcgccgcttgtttaagtcaggcggacaggcaagctctgcagacgctgaaa
aatgagcttgatactcgcttgcatcaacagcaagctctggcgcaacaagccaagcttggg
ctggaaaagttacaacaacgagggctggcggcagagtatcagctgtcattggcgccagct
cttcgtatagagcatggcgagcttgagcaattgcagcagcaattgacacaggagttgtgg
cagatagaacgcgttttaacagaggatagcgagcaacaagcggcgcaaggctccttggtg
agtcagcttgaggctgcgaaacagtcctatgatgatatggcgtatttgcatgcccttatt
ggctcgcaaaagggcgataaattccgtaagttcgcccaagggctcacactcgatcacctt
gtggcactggctaaccgacagcttgggcgtttgcatgggcgctatttattagagcgcaaa
ggcagtgatgccttggaattacaagtgattgatacctggcaaggggatgcgctaagggat
acccgtacgctttcagggggagagagctttttggtgagtttagccttggccttagcgtta
tcagatctggtcagtcataaaaccagtattgactcactctttttagatgaaggctttggt
accttagacagtgaaaccttagacatggccctcgatgccttagataacttgaatgcctca
ggtaagatgattggggtgataagccatatcgaagccatgaaggaacgcattgatgtacag
ataaaagtaaataaaatgaatggcctaggtattagtcgattacagagtcaataccaatat
caagcagttttagaatga
DBGET
integrated database retrieval system
