Shewanella denitrificans: Sden_2838
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Entry
Sden_2838 CDS
T00344
Name
(GenBank) Deoxyribodipyrimidine photo-lyase type I
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdn03400
]
Sden_2838
Enzymes [BR:
sdn01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
Sden_2838
DNA repair and recombination proteins [BR:
sdn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Sden_2838
Prokaryotic type
Sden_2838
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
ABE56117
UniProt:
Q12KA9
LinkDB
All DBs
Position
complement(3387615..3389108)
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AA seq
497 aa
AA seq
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MPIESNVLNNGALNPNSLMWFRNDLRLGDNPALNAACEYAGVHGGKVRAVYLVTPKQWQH
HHVAPMQIDFIRRHLELLARSLGALGIPLDVLYGQVFDDTAALLVDYVNEHQIGAIFAGK
EPEINEQRRDNALIASGLNLTLLQQDCLLAPGAVLNLSGDMYKVFTPFSKKWKQIAASMQ
ILPVPVPAPVGSAITQIAPIVFDCPMRSSEAWQAGEGAAKRILERFLNQNVAEYQVLRDF
PAEEGTSRLSPYLALGIISPKQCVAAILQRFPEALVDYTSPAKTWLNELMWREFYRHLLV
AFPRLSMGHNFNALGDGIKWRNDKAEFNAWCEGRTGYPLVDAAMRQLNQTGWMHNRLRML
VASFLTKHLLIDWRWGEQYFRQQLIDGDLAANNGGWQWSAGTGCDAQPYFRVFSPLSQSA
KFDSDCEFIKRFVPELSEVSNKAIHEIKCSAAYEAAKVDLFAPPELEGKSATYPAPIVEH
SFARKRAIEVLSALKKG
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgcctattgagagtaatgttcttaacaatggggcattaaaccccaatagtctcatgtgg
ttcagaaatgacttacgccttggggataatcctgcgctaaacgccgcctgtgaatatgct
ggtgttcatggtggcaaggtgcgagccgtttatcttgtgacgcctaagcaatggcagcat
caccatgtggcgccaatgcaaattgattttattcgccgccaccttgagttattagcccgc
tctcttggcgccttaggcattccattggatgtgctttatggtcaagtgtttgatgatact
gctgcattactggttgactatgtgaatgagcatcaaatcggcgctatctttgcgggtaaa
gaacctgagattaatgaacaaaggcgggataacgcattaattgcatcaggcttgaacttg
accctattgcagcaagattgcctgttggcaccgggtgctgtgctcaatcttagcggtgac
atgtacaaggtatttaccccttttagtaaaaagtggaagcaaatcgcggcatccatgcaa
attttacctgtgcccgtacccgcgcccgttggcagcgcgattacccaaatagcacccata
gtgtttgactgcccaatgcgctcaagcgaggcttggcaagcgggtgagggcgctgccaag
cggatattggagaggtttttaaatcaaaatgtggccgaatatcaagttttaagggatttc
cctgcagaagagggtaccagtcgattatccccctatttagccctagggattatcagccct
aaacaatgcgtggccgctattttacagcgctttcctgaagccttagtggattataccagc
cccgcaaaaacttggcttaatgaattaatgtggcgtgaattttatcgtcacttgctggtg
gcgttcccgcggctttctatggggcataacttcaacgccttaggcgatggcataaagtgg
cgtaacgataaggctgaatttaacgcctggtgtgaggggcgcactggctatcccttggtg
gacgccgcgatgcggcaactgaaccaaaccggttggatgcataatcgactcagaatgtta
gtggcaagctttttgaccaaacacttgttgatcgattggcgctggggtgagcagtatttt
cgccagcaactgatagacggtgatttggcggcaaataatggcggctggcagtggtctgcg
ggcacaggttgcgatgcgcagccttatttccgagtattcagccctttgagccaaagcgca
aagtttgattctgattgcgaatttataaaacgttttgtgcctgagctcagtgaggtgtcc
aataaagccattcatgagataaaatgcagtgctgcttatgaagcggcgaaggtggacttg
tttgccccacctgagcttgagggcaaatctgcgacttatcccgcgcccattgtcgagcat
agctttgcccgtaaacgcgctattgaagtgcttagtgcattaaaaaaggggtaa
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