Shewanella denitrificans: Sden_2949
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Entry
Sden_2949 CDS
T00344
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdn03009
]
Sden_2949
Enzymes [BR:
sdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Sden_2949
Ribosome biogenesis [BR:
sdn03009
]
Prokaryotic type
rRNA helicases
Sden_2949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_30
AAA_19
Helicase_C_2
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABE56227
UniProt:
Q12JZ9
LinkDB
All DBs
Position
complement(3526639..3528051)
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AA seq
470 aa
AA seq
DB search
MTLSNSDSPIVANTAFSSLSLKTELLENLKTMGYESMTQIQAQSLPPILAGDDVIGQGKT
GSGKTAAFGLGLLNKLDVKRFRIQTLVMCPTRELADQVAKEIRTLARGIHNIKVLTLCGG
VPMGPQVGSLEHGAHIIVGTPGRIIDHLDRNRLDLSNVNMLVLDEADRMLEMGFQDHIDA
IIEQTPRERQTLLFSATFPDQIKSIADEIMYKPVMVKVESTHDAISIEQHFYQLEDNKSR
LEALRLLLLSEQPESAVVFCNTKRETQQVADELAEFGFSVLALHGDLEQRDRDQMLLQFA
NQSARILVATDVAARGLDIDALDAVFNFHLAYDAEVHLHRIGRTGRAGSTGAAYSFIGHD
DGYKVAMIEEMLNIEIVTEALPGLNVLNKTPLAANMVTIQIEGGKKQKIRPGDIVGALTG
DNGLDANDIGKIKVTDIRAYVAVKRNVSNQALNKLNKGKLKGRSYRAWLL
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaccttgagtaactcagacagcccaatagtcgctaacacggcgttttcatcgctttcc
cttaaaactgaactgcttgagaacctcaagaccatgggttatgaatccatgactcaaatc
caagctcagagcttaccgccaattttggccggtgatgatgtgattggccaaggcaaaacc
ggctcgggtaagactgccgctttcggcttaggtttgttgaataaattggatgtgaagcgt
tttcgcattcagaccttggtcatgtgcccaacgcgtgagttggccgaccaagtcgccaag
gagatccgcaccttggctcgcggcattcacaatatcaaggtattaaccttgtgtggcggc
gtccctatggggccacaagtgggctcccttgaacatggtgcccatattattgttggcact
ccagggcgcataatcgatcatttagatcgcaaccgtttagatttaagcaatgtgaacatg
ctagtgctcgatgaagcggatcgcatgctagaaatgggctttcaagatcacatagatgcc
attattgagcaaactccccgtgagcgtcagacgctgttattcagcgccaccttcccagat
caaattaaatccattgccgatgagataatgtacaagcctgtgatggtcaaagtcgagtcg
acccatgacgccatcagcatagaacaacatttctatcagcttgaagacaacaaatcacgc
ctagaagcgctgcgtttattgctgctcagtgagcaacctgaaagtgcggtggtattttgc
aataccaaacgtgagactcagcaggtggctgatgaattagccgagtttggctttagtgtg
ctggcactgcatggggatctggagcaaagggatcgcgatcaaatgttactgcaatttgcc
aaccagagcgcacgtattctggtggccaccgatgtggcggctcgcggcttagatatcgat
gccttagatgcggtatttaacttccacctagcctatgatgccgaagtgcatcttcaccgc
attggccgtacaggccgtgctggcagtaccggcgccgcctacagttttatcgggcatgat
gacggctataaggtcgccatgattgaagaaatgttaaatattgaaatagtcaccgaagcc
ttgccaggcttgaacgtgctaaataaaaccccgctggcggccaacatggtgaccattcaa
attgaaggcggcaagaagcagaaaattcgccctggcgacatagtcggtgcccttactggt
gataacgggttagatgccaacgatatcggtaaaatcaaggtaacggatattcgcgcctat
gtggcagtaaagcgcaatgtgtctaatcaagcgctgaataaattgaacaaaggtaagctt
aagggccgcagctaccgcgcctggcttttataa
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