Shewanella denitrificans: Sden_3164
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Entry
Sden_3164 CDS
T00344
Name
(GenBank) Penicillin-binding protein 1B
KO
K05365
penicillin-binding protein 1B [EC:
2.4.99.28
3.4.16.4
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn00550
Peptidoglycan biosynthesis
sdn01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Sden_3164
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
sdn01003
]
Sden_3164
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sdn01011
]
Sden_3164
Enzymes [BR:
sdn01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.28 peptidoglycan glycosyltransferase
Sden_3164
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
Sden_3164
Glycosyltransferases [BR:
sdn01003
]
Polysaccharide
Bacterial polysaccharide (excluding LPS)
Sden_3164
Peptidoglycan biosynthesis and degradation proteins [BR:
sdn01011
]
Peptidoglycan biosynthesis and degradation
Glycosyltransferase/DD-Transpeptidase (Class A PBP)
Sden_3164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transgly
Transpeptidase
UB2H
Motif
Other DBs
NCBI-ProteinID:
ABE56440
UniProt:
Q12JD6
LinkDB
All DBs
Position
complement(3793109..3795415)
Genome browser
AA seq
768 aa
AA seq
DB search
MTTKAKTKSKSTKTRKSGSSWLARLWSIGWKLSIVLLAFCSFYSIYLDQIIARKFEGQKW
HLPAQVFSRSMALYPGAAVNHPQLMAELKLLGYRKVANPTQVGEFSASSTRIELWRRPFL
HPEGDQAELRVMISFDSYGINSVRRMTDKRELAVFHLEPVLLDRIIAGDGEDRVFVNTEA
MPQAIVDALILVEDRSFYEHHGVNPFAIARAALVNISAGRTVQGGSTLTQQLAKNFFLSS
ERSIVRKLREALMALIIDFRYSKDAILEAYLNEVYMGQDKSRGVHGMGLASQFYFGRPVA
ELTIAQQAFLVAVIKGPSYYNPWRYPERAQERRDLVLRLLMEDNKLTVAQYKAAARSPLA
LRDARRSAHQQLPAFFAVVKNELKQRYGTGLLKESGVKVYTTLDPMAQEAAEKAVVSTMK
SLESRTKNVQVGMVVTDKYTGGIAAMVGDKVPGFSGFNRAVEIRRPIGSLVKPFVYATAL
TQGDKFTLATPIDDNPITLKNEQGKLWSPKNVDKKFSGSVPLMTAFKQSMNVPTVNVGLK
VGVDNVAQTLANAGWSEAINPYPSMLLGAINGSPLMVAQTYQTLANGGRFRPLTSITAVL
DSQNRPLEVNQLNPVQAMSPAADYLVQYAMQQVVRSGTASRLGQAFPGVALAGKTGTSND
SRDSWFAGFDERNVAAIWVGRDDNGKTNLYGSSGAMAVYQAFLAERPPLSLRMPAVEGVV
QGYFDRSTGVAMSADCGDVQALPALTQSYQPAANCGQPLSWWQQLLGK
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgacgactaaagcaaaaacgaaatcgaaatcaacaaaaacgcgtaaatcaggttcttct
tggttggctcgcctctggtccatcggctggaaactcagcatagtactgctggcattttgc
agcttttattctatttatttggatcaaatcatcgcccgtaaatttgagggccagaaatgg
cacctgccggcgcaagtgtttagccgttccatggcgctctatcctggggctgcggtgaat
catccgcaattaatggccgaacttaaattgctgggctatcgaaaagtcgctaacccgact
caagtgggggagttttcagcttccagcacccgcatcgaactgtggcgccgacctttcttg
caccctgaaggggatcaagctgagctgcgggtaatgataagtttcgacagttacggcatt
aattccgtgagacgcatgactgataagcgtgagcttgcagtgttccatctggagcctgtg
ctgctggatagaattatcgcaggtgacggtgaagacagggtatttgtgaacactgaagcc
atgccccaggcgattgtggatgcgctgattttggtggaagatcgcagcttttatgagcat
catggggtgaatccgtttgccatagcacgagccgccttagtcaatataagcgcgggtcgt
actgtgcaaggtggctctaccttaactcagcagctagcgaagaactttttcttaagcagt
gagcgctctatcgtgcgcaaattgcgtgaagccttgatggcgctcatcatagattttcgc
tacagcaaggatgcaattttagaagcctacttgaatgaagtgtatatggggcaagacaag
tcccgcggcgtgcatggcatggggctggcttcacagttttattttggccgcccagtggca
gagctcactatagcgcagcaagccttcttggtggctgtgattaaagggccatcctattac
aatccatggcgttaccctgaacgcgcccaagagcgccgtgatttagtgctgcgtttattg
atggaagacaataaattaacagtggcacagtacaaggcggcagcgcgctcacccttggca
ctgcgtgatgctagacgttcggctcatcaacaattacctgccttctttgctgtggttaaa
aatgagttaaagcagcgctatggtactgggctattaaaagagtctggggtcaaggtctac
actacgcttgatcctatggcgcaggaggcggctgagaaagccgttgtatccaccatgaaa
tcattagagtcacggactaaaaatgtccaagtgggcatggtggttaccgataaatacaca
ggcgggattgccgccatggtgggggataaggtacctgggtttagcggctttaaccgtgcg
gttgaaatacgtcgccccataggctcgttagtgaaaccttttgtttatgccacggcgtta
acccaaggggataaatttaccctagcgacccccattgatgataatccaatcaccttgaaa
aacgagcaaggtaagctgtggtcacccaaaaacgtcgataagaaattctcgggttccgtg
ccactaatgacggcgtttaaacaatcgatgaacgtgcctacagtgaacgtgggtttaaaa
gtgggggtggataatgttgcgcaaaccctcgccaatgccggctggtctgaagccattaac
ccatacccctctatgctactcggggcgattaatggctcgcccttaatggtggcgcaaact
tatcaaaccttagccaatggtggccgttttaggccgctaacttctatcactgcggtgctc
gatagccaaaatcgtcctttagaggtcaatcaactcaaccctgtacaggccatgtcaccg
gcggcggattatctagttcaatatgccatgcagcaggtggtgcgctcaggcacggcaagt
cgcttaggtcaggctttccccggcgttgcgcttgcgggcaagacaggcaccagtaacgac
agtcgcgattcttggtttgccggttttgatgagcgaaatgtggccgctatctgggtgggg
cgtgatgataatggcaagactaacctctatggcagcagcggcgccatggcggtttaccaa
gcattcttagcggagcggccgccactcagcttacgtatgccggcggttgaaggtgtggtg
cagggctatttcgatcgcagcaccggcgtcgccatgtccgccgattgcggtgatgttcaa
gccttgccagctttaacccagagttaccagcctgcggccaattgtggtcagccgctttct
tggtggcaacagttattggggaaataa
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