Shewanella denitrificans: Sden_3167
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Entry
Sden_3167 CDS
T00344
Name
(GenBank) 2',5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdn03016
]
Sden_3167
Enzymes [BR:
sdn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Sden_3167
Transfer RNA biogenesis [BR:
sdn03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Sden_3167
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ABE56443
UniProt:
Q12JD3
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All DBs
Position
3800702..3801340
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AA seq
212 aa
AA seq
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MNPEKQSPNNQNSIEFKRLFLGFSIPANQTELLTALQQQLTPHLNSDAKAIAAENFHLTL
LFLGGFPTAQLPQLLTTIDTLRLALFNQTLTKLCFWPGPKILCLKGEACPNLADLAEQVS
TQLAPLIHNQAHNPLIKEHCYTPHISLFRKVTRFNQHQAEPCLPERQINLAPRELHLYES
RSVNTEQNGKAQSSVRYQILHSWPLMPMKSEA
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atgaacccagaaaaacagagtccaaataatcaaaattctattgaatttaaacgattattt
ctgggtttttcaattccagccaaccagactgaactcttgactgcactgcagcaacagctt
acgcctcacttaaactctgacgccaaggctattgctgcagaaaactttcacctaaccttg
ttatttttaggtggattccccaccgctcagttaccgcaactgctaacgacaattgacacg
ctcaggctcgctttatttaatcaaaccttgaccaagttatgcttttggcctgggcccaaa
atcctctgccttaagggagaagcctgcccgaacctcgccgatttagccgaacaggtaagc
acgcagttagcccccttgatacataaccaggcgcacaaccccttaataaaagagcactgc
tacacgccgcacatcagcctgtttcgcaaagtaacacgctttaatcagcaccaagctgag
ccctgtcttcctgaacgacaaattaacttagctccacgggagttacatttatatgaatcc
cgctcggtgaacacagagcaaaacggcaaagctcaaagttcagtgcggtatcaaattctt
catagttggccacttatgccaatgaagagtgaagcgtaa
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