Shewanella denitrificans: Sden_3172
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Entry
Sden_3172 CDS
T00344
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sden_3172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdn03019
]
Sden_3172
Enzymes [BR:
sdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
Sden_3172
Messenger RNA biogenesis [BR:
sdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sden_3172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
ABE56448
UniProt:
Q12JC8
LinkDB
All DBs
Position
3805298..3806647
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AA seq
449 aa
AA seq
DB search
MRLDIISRDGHDISRRQISENALKVLYRLNKSGYKAYLVGGGVRDILLGLEPKDFDVVTN
ATPDEIKALFRNCRLVGRRFRLAHIVFGRDVIEVATFRGHHGENSDNISKSNAEGRLLRD
NVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMDDLRNKSIKMIGDPETRYREDPVR
MLRAVRFATKLDMQIDPVTAAPITELASLLADIPAARMYEEVLKLFFAGKAEANFELMLK
FGLFAPLFPQVQALLDESPKGDTARMVRAIMRNTDLRVSQDKPVTPAFFYAAMLWYPLKR
RAEDMAMEIGLSAYDAHVAAMGDVMEQQCQTISIPRRFSTPAKDIWQLQLRLERGQNTRS
FKLFEHPKFRAAYDLLLLRGETEAGTIAKSATWWQTFVDADEDTRSKFVKESSKGGSRNR
STGTRKRRKPSATNSAAKSAAPSANKTPD
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtcttgatatcatttccagagatggtcacgatatttctcggagacagatcagtgaa
aatgcccttaaagttctctatcgcttaaataaatcaggctataaagcctatttagtcggc
ggtggggttcgcgatattttgttgggtttagagcctaaagacttcgacgtggtcaccaac
gccacccctgatgaaatcaaggccctgtttcgcaattgccgtttagtcggtcgccgtttt
agattagcgcatatcgtttttggtcgtgatgttatcgaagtcgccactttccgtggtcat
cacggcgagaacagcgacaacatctctaaatcgaatgccgaaggacgcctgttacgtgac
aacgtttatggcgaaatagatgaagacgccgagcgccgtgatttcacagtcaacgcctta
tattatgatatcagtgattattctatccgcagctatggcggcggcatggatgacttgcgc
aataaaagcatcaagatgattggcgatcctgagacgcgctaccgtgaagatcctgtgcgt
atgttaagggcggttcgctttgccactaaattagatatgcagattgatcctgtcactgca
gcgcctattactgagttagcaagcctattggccgatattccagctgcgcgcatgtatgaa
gaagtgctgaaactcttttttgccggcaaagctgaagccaatttcgaattaatgctaaaa
tttggcttatttgcgccgctattcccacaagttcaggccctattggacgagtcaccaaaa
ggtgataccgcccgtatggtgcgcgccatcatgcgcaataccgatcttcgcgtcagccaa
gacaaacctgtcacccccgccttcttctatgccgctatgctttggtacccccttaagcgc
cgcgccgaagatatggcgatggaaataggcctaagtgcttatgatgctcacgttgccgcc
atgggtgatgtgatggagcagcagtgtcaaaccatcagcattcctcgtcgttttagcacc
ccggcaaaagacatttggcagttacagttacgtcttgagcgcggccaaaatacccgctcc
ttcaagttattcgagcatccaaagttccgcgcagcttatgatttactgctgcttaggggc
gagacagaagctggcactatcgccaaatcggccacttggtggcaaacctttgtcgatgcc
gatgaagacacccgtagcaagttcgtgaaagaatcgagcaagggcggtagtcgcaatcgc
agcacaggcacgagaaaacgacgtaagccaagtgccacaaacagtgctgctaagagtgct
gccccaagcgcgaataaaactcccgattaa
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