Shewanella denitrificans: Sden_3178
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Entry
Sden_3178 CDS
T00344
Name
(GenBank) ABC transporter related
KO
K06158
ATP-binding cassette, subfamily F, member 3
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
sdn03012
]
Sden_3178
Translation factors [BR:
sdn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
Sden_3178
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_tran_Xtn
AAA_21
SMC_N
MMR_HSR1
AAA_29
RsgA_GTPase
AAA_16
AAA_22
ATP-synt_ab
DUF815
ATG16
AAA_23
IFT57
MeaB
ABC_tran_CTD
DUF7623
Motif
Other DBs
NCBI-ProteinID:
ABE56454
UniProt:
Q12JC2
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All DBs
Position
3810007..3811959
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AA seq
650 aa
AA seq
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MPISSFISPTKLSFMISISQAQLVRGTKTLLDEASLTIYPGHKVGLVGANGTGKSSLMAL
ILGQLHLDKGEFSLPAGWRIATVAQETPALEVSALEYVIDGDTEYRQLEAQLHQAQADDD
GNAIARIHGQIDAIGGYAIKARAGSLLAGLGFSEVSQSNEVKSFSGGWRMRLNLAQALLC
RSELLLLDEPTNHLDLDTMYWLEGWIKSYQGTLILISHDRDFIDGIVDEIVHVEHYKLNF
YKGNYSAFERIRAERLAQQQVAFERQQKERAHMQTFVDRFRYKASKAKQAQSRLKALERM
TELLPSHAQSPFYMEFREPEALPNPLIAMEQVSVGYGDTTILSKVHLNLVPGARIGLLGR
NGAGKSTLIKLLSGQLQAKTGLYQPNPGVNIGYFAQHQIEFLRLDDTPLQHLVRLAPNAR
EQELRNFLGGFGFDGDMVLSPVRPFSGGEKARLVLALLVWQRPNLLLLDEPTNHLDLEMR
HALTMALQTFEGAMVIVSHDRHLLRLSCSDYYLVDQGVVTSFDGDLDDYHQWLLEAAKAA
QSTPANGDDAKPLQDKKQQKRIQAELRQKVSPLKKLQAKLETAQDKYATRLKELEAALAD
TSLYDAENKAQMTAVLNERTQLTQAMEESEMNWLELQEQIDEIELEFELE
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
ttgccaatttcgtcctttatttctccaactaagttgtcattcatgattagcattagccaa
gcacaattagttcgcggtaccaagaccttgctcgatgaagcctcattaaccatctatcct
ggccacaaggtcggcctagtgggcgccaatggcacaggtaagtcatcactaatggcgctg
atcttaggacaacttcatttagacaagggtgaattcagcttaccagcgggttggcgcatc
gctactgtggcccaggaaaccccagcccttgaggtatcggctcttgaatatgttatcgat
ggtgacactgagtaccgtcagttagaagctcagttgcatcaagcccaagccgatgatgat
ggtaacgccatcgcacgcattcatggacaaattgatgctattggcggctatgccattaaa
gcccgcgctggctcactattagccggcctaggttttagtgaagtatcacaaagcaatgaa
gtaaaaagcttttctggtggttggcgcatgcgcttaaacttagcccaagcgctgttatgc
cgctcagaattgttattactcgatgagcccactaaccacttagacttagataccatgtac
tggcttgaaggctggattaaatcctatcaaggcacccttattcttatcagtcatgatagg
gactttatcgacggtattgtcgatgaaatcgtccacgtagaacattacaaactaaatttc
tacaagggtaattacagcgcctttgaacgcattcgcgccgaacgtttggctcagcaacaa
gtggcttttgagcgccagcaaaaagagcgtgcgcatatgcaaactttcgtcgaccgtttc
cgctacaaggccagtaaggctaagcaagctcagagccgtttaaaggcattggagcgcatg
acggaattactgccatcccacgctcagagcccattttatatggagtttcgtgagccagaa
gccttgccaaacccacttattgccatggagcaagtgtccgttggctatggcgataccacc
attttaagcaaggtacatttgaacttagtgccaggcgctcgcatcggtcttttaggccgc
aatggcgcaggcaagtcgaccctcatcaaactgttatctgggcaattacaagccaaaacg
ggtctgtatcagcctaatcccggcgtcaatattggttactttgcccagcatcagatagag
tttttacgcttagatgataccccgctgcaacatcttgtgcgcttagcgcccaatgctcga
gagcaagagctgcgtaacttccttggcggctttggcttcgatggcgatatggtactttcc
ccagtgcggcccttctctggcggcgaaaaagcccgtctagtcttagcgctgctggtatgg
caaaggcctaacctgttgctgctcgatgaacccaccaaccacttagatttagagatgcgt
cacgccttaaccatggcactgcaaacgtttgaaggcgcgatggtgatagtgtcgcacgat
aggcatttattacgcttgagctgtagtgattattacttggttgaccaaggcgtggtcaca
agcttcgatggcgacctagatgattaccatcaatggttgttggaagcggctaaagcggct
caatcaaccccagccaatggtgatgatgccaagccattgcaagataaaaaacagcaaaag
cgcatccaagccgaactaaggcaaaaagtgtcgccactcaagaagttgcaagccaagctt
gaaacggcccaggacaaatatgcaacacggctcaaagaattagaagccgcattagccgat
actagcctctatgacgctgagaacaaggcgcaaatgacggcggtattgaatgagcgtacc
cagctgactcaagccatggaagaaagtgaaatgaattggttagagctacaagagcagatc
gacgagatagaacttgagttcgaactcgaatag
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