Shewanella denitrificans: Sden_3352
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Entry
Sden_3352 CDS
T00344
Name
(GenBank) diguanylate cyclase/phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdn03019
]
Sden_3352
Messenger RNA biogenesis [BR:
sdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sden_3352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
FTA4
Motif
Other DBs
NCBI-ProteinID:
ABE56628
UniProt:
Q12IU8
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All DBs
Position
complement(3993595..3995568)
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AA seq
657 aa
AA seq
DB search
MKLTKILTKKLTSFWLLSLMAVACVFLLCAGISFIQLTYKFQQQQVKDFNTLMTQQVQHF
SHLENAAINQVQRDDEQGRSQAQLAHWLPQLLANYHTVEFRLFEGDKLRYSYNNGANLQQ
GVRYKQALDGHWRMELVLVAPFYLHALSWQEYWVLLIGFAAIFALVFYGQRWFAQELDGV
EELAMRSHLILDGKLEQALASAGSGKPRLINRALTRLLEQLQDAQRERGRFDKFIRSNVF
LDPQTRIGNQLFFVNRLDGLSQDQQMISHGAMYLIDFADLDIAQQEKGDQFIADFLTQLV
NSVNQALTEHVDSIFSRRSFQQFAIVVPQLSLTEADSLANKLLKICISQAGKDFPNQDNF
VHLGAAFYRAGDNQQQLLEEADMALKAAQLQRSNNWFMYDKGAVDEEIAKGSVRWRSFLE
SSLLNKRVISFSQGVFDSDNTLHHHEVFSRIRDNQGKDVRATLFIPMANKCGLMPQIERQ
LLERVFFTLMPQSQANYSVNLSLDSLTSRAFMRWLKTLLLEHRPLATRLIFEISEDIIVK
HQSKLTTHLDMLKKMGAKLCVDHVGQQVVGTHYIQECDFDFVKLHKSIIRKIHLRSENQL
FIRSFIGGLYRAEVQVFAEGVTSFEEWQTLKILGVSAAQGEFLGEVQEANYTVNVSK
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcactaaaattcttacaaaaaaactgactagcttttggctactgtcgctgatg
gcggttgcctgtgtatttttactttgcgccggcatcagttttattcaactcacctacaag
tttcagcagcaacaggtgaaagattttaataccttaatgacccaacaagtgcagcacttt
agccacttagaaaacgcggccattaaccaagtacagcgagatgacgaacaagggcgttct
caagcacagttggcccattggttaccgcagctcttggctaattatcacactgtggagttt
cgcttatttgagggcgataagcttaggtacagttacaataatggtgccaatctgcaacag
ggggtacgctacaaacaggccttagacgggcattggcgtatggagcttgtgctggtggcg
ccattttatttacacgcgttaagttggcaagagtactgggtgttattgataggttttgcc
gctatttttgccctcgtcttctacggtcagcgctggtttgcccaagagcttgatggggtc
gaggagcttgcgatgcgcagtcatctcatcttagatggtaagcttgagcaagccttagcc
agtgccggcagcggcaaacctaggcttatcaatcgtgccctgactcgtttgttggagcag
ttacaagatgctcagcgagagcgtggccgatttgataaatttattcgctccaatgtgttt
ctcgaccctcaaacccgcataggtaatcagctatttttcgtgaatcgtctcgatggactc
agccaagatcagcagatgatttcccatggggctatgtaccttattgactttgccgatctg
gacatagctcaacaagaaaaaggcgatcagtttattgcggatttcttaacccagttggtt
aacagtgtgaaccaggccttaactgagcatgtggacagtatttttagccgcagaagtttt
cagcagttcgccatagtggtgcctcagctgtcgttaactgaggcggactcactggccaat
aaattgctaaaaatttgcatcagtcaggcgggtaaagattttcctaatcaagataatttc
gtccacttaggggccgccttttatcgggctggggataatcaacagcaattgctcgaagaa
gccgatatggcgcttaaagccgcgcagttacaaagaagcaataattggtttatgtatgat
aagggcgcggtggatgaagagattgccaaaggctcggtgcgctggcgaagtttcttggaa
tcaagcttactcaataagcgggtgataagtttttctcaaggggtgtttgatagcgataat
acgctacatcaccatgaggtcttcagccgtattcgtgataatcaaggcaaggatgtgcgc
gcgaccttatttatccccatggccaataagtgcggcctgatgccgcaaattgagcggcag
ctgctggagcgagtattttttaccttaatgccccaaagccaagctaattacagtgtgaac
ttaagcttagactctcttactagccgcgcctttatgcgctggctcaagactctattatta
gagcacaggcctttagccacccggcttatttttgaaatatcagaagatattattgttaaa
caccagagcaagttgaccacacatttagacatgttgaaaaaaatgggcgctaaactgtgt
gtcgaccacgtaggacaacaagtggtgggtacacattatatccaagaatgtgattttgat
tttgtgaagttgcataaatctatcattcgaaaaatccatttacgctcagaaaatcaatta
tttataagaagctttattggcggtttataccgcgccgaagtgcaagtgtttgccgaggga
gtaacaagcttcgaagaatggcaaaccttaaagattttaggtgtgagcgccgcacaaggt
gaatttctcggtgaagtacaagaagctaattacactgtgaatgtttctaaatag
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