Shewanella denitrificans: Sden_3389
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Entry
Sden_3389 CDS
T00344
Name
(GenBank) type II secretion system protein E
KO
K02652
type IV pilus assembly protein PilB
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
sdn02044
]
Sden_3389
02035 Bacterial motility proteins [BR:
sdn02035
]
Sden_3389
Secretion system [BR:
sdn02044
]
Type II secretion system
Pilin secretion/fimbrial assembly protein
Sden_3389
Bacterial motility proteins [BR:
sdn02035
]
Pilus system
Pilus assembly proteins
Sden_3389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T2SSE
MshEN
AAA_30
AAA_22
AAA_16
AAA_14
AAA_29
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ABE56665
UniProt:
Q12IR1
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All DBs
Position
4043609..4045318
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AA seq
569 aa
AA seq
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MPSTALHLGLSNLFIRKGLLSEDIMASAIADSRKNKHSLVATLINGKHLSAREIAELCHE
EYATPLLDLAEFDVAAIAEDLLNKKLIAKHQCLPLFKRGNRLYIATSDPTNITALEDFQF
SLGLHAEAILVEDDKLSKALEKVIEDDITGLDLNGMDEAALAGIEITDTDKRHEEPGGES
SDDAPIVIYINKILTDAIRKGASDLHFEPYEKRYRIRFRIDGILHEVSEPPVALSGRISA
RLKVMSKLDIAERRVPQDGRIKMKLSRTKSIDFRVSTLPTIWGEKIVMRILDSSSAQLGI
EKLGYEDDQRLLYEEMLAKPQGMILVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVE
INLEGVNQVHINLKAGLTFASALRSFLRQDPDVVMVGEIRDLETAEIAIKAAQTGHLVLS
TLHTNSAAETLTRLINMGVPGYNIASSVNLIIAQRLARRLCPECKHAEDIPVAELQRLGF
QQADIDKGFTVFKPVGCEFCSGGYKGRLGVYEVMKMSDDIARTIMEGGNSLQIARIAKEQ
GMRDLRQSGLLKVIQGLSSIAEINRITSS
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgccctcaactgcgcttcatctaggcctctccaatttgtttattcgcaagggtctcctt
agcgaagacatcatggcctccgccatcgccgattcacgtaaaaataaacactcgctagta
gcaaccctgattaacggcaagcacttatccgctcgtgaaattgccgagctgtgccatgaa
gaatatgccaccccgctattagacttagcagaattcgatgttgccgccatcgcggaagac
ttattaaataaaaaacttatcgccaaacatcagtgcttaccgctatttaagcgcggtaat
cgcctctatattgctacctctgaccccaccaatattaccgcattggaagattttcaattt
agcttaggcctgcacgccgaagccattttggtggaagacgataagctcagcaaggcccta
gagaaggtcatcgaagatgatattactgggttagatctaaacggcatggatgaagccgcc
ctcgctggcattgaaatcaccgacacagacaagcgtcatgaagagccaggcggtgaaagc
agtgacgatgcacccatcgttatttacattaataaaatcctcaccgatgccatacgtaaa
ggcgcctcagatttgcattttgagccctatgagaagcgctatcgcattcgttttcgcatc
gatggcatactccatgaagtctcagagccgccagtggcactttccgggcgtatttcggcc
cgcttaaaggtgatgtcaaaacttgatattgccgagcgccgcgtgccacaagatggccgc
atcaagatgaagctatcccgcactaaatctatcgactttcgtgttagcaccttgcccacc
atctggggtgagaaaatcgtaatgcgtattttggactcttcatcggcgcagttaggtatt
gaaaaacttggctatgaagacgatcaacgcttgctctatgaagaaatgctcgccaagcct
caggggatgattttagtcacaggccccacgggctcaggtaaaaccgtgtccttgtacaca
ggtcttaatattctcaataccgaagagcgtaatatttccaccgcagaagacccagttgaa
attaacctcgaaggggtgaatcaggtccatatcaatttaaaagccggcctgacgtttgcg
tcagccctgcgctcatttttgcgccaagatccggatgtggtcatggtgggtgaaatacgt
gacttggaaactgcagaaatcgctattaaggcggcgcaaaccggccacttagtgctatcg
acactgcatactaactcggcggcggaaaccctaacccgcctcattaacatgggtgtgcct
ggttataacattgcaagttcggtgaatttaattatcgctcagcgtttggcaaggcgcctg
tgtcccgagtgcaaacatgccgaagatattcctgtggccgagctgcagcgcttaggcttt
caacaagctgatatcgacaaaggtttcactgtgtttaagcccgttggctgtgagttttgc
tccggtggctataagggccgtttaggcgtatatgaagtgatgaagatgtctgatgatatt
gcccgcaccataatggaaggcggtaactcattgcaaattgcccgcatcgccaaagagcaa
ggcatgcgggatttacgccaatcgggtctgttaaaagtaatccaaggcctaagtagcatc
gccgagatcaatcgtatcaccagctcttag
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