Shewanella denitrificans: Sden_3437
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Entry
Sden_3437 CDS
T00344
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn00061
Fatty acid biosynthesis
sdn00071
Fatty acid degradation
sdn01100
Metabolic pathways
sdn01212
Fatty acid metabolism
sdn02024
Quorum sensing
sdn04146
Peroxisome
Module
sdn_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Sden_3437
00071 Fatty acid degradation
Sden_3437
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Sden_3437
09145 Cellular community - prokaryotes
02024 Quorum sensing
Sden_3437
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sdn01004
]
Sden_3437
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sdn04147
]
Sden_3437
Enzymes [BR:
sdn01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Sden_3437
Lipid biosynthesis proteins [BR:
sdn01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Sden_3437
Exosome [BR:
sdn04147
]
Exosomal proteins
Exosomal proteins of breast milk
Sden_3437
Exosomal proteins of breast cancer cells
Sden_3437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Hpt
Motif
Other DBs
NCBI-ProteinID:
ABE56712
UniProt:
Q12IL4
LinkDB
All DBs
Position
4106540..4108207
Genome browser
AA seq
555 aa
AA seq
DB search
MELSMENFIKTPIQMLSHWVETQGDQVYLRQPIEGKFKNLTWREVQQQVHKIAGALRHLG
LAPGDKVALLSKNCAEWFIADLALMQGGYISVPIYPTANTETIRYVLEHSGAKAIFVGKL
DHWSEQEEAIGGDLLRLAMPYETMPSQYQWDQLLNLGSPLVEAPTTKPDDVMTLIYTSGS
TGKPKGVIQTFASYGWTCEAVVRDLRTNTQDSLLSYLPLAHITERVAVEGSSFLSGSTVS
FVESLDTFVADVKRAKPTVFFSVPRLWTLFHLNIINKIGASRLKLLLRIPIVSSIVKHKI
QKELGLEHCRLLGSGSAPIPASLIQWYHNLGMDICEAWGMTENCAYSIINYPFDANKIGS
VGRPVEGCLVRRGNDGELLLKTPGLMTGYYLQEEATKAAFDDDSYFRTGDICEIDADGCI
SITGRVKDNFKTSKGKYVAPVPIERKLAQDSHIELICVIGSGLPHPVALVQLSEGASLQA
REEVRTSIKATLDAVNPHLESHEHVDAVVVVKEPWTIENDVLTPTLKIKRHVLEKAFSEK
VDGVRGAQVRWEDEL
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggaactgtcgatggaaaacttcattaagaccccgatacaaatgttgtcccattgggtc
gagacccaaggcgaccaagtctatttacgccagcctatagaaggtaagtttaaaaattta
acctggcgtgaggttcagcaacaagtgcataaaattgctggagccttacgtcatcttgga
ctggcgcctggtgacaaggtggctctcctgtctaaaaactgcgccgagtggtttattgcc
gatctggccttaatgcaagggggatatattagtgtgcccatttacccgacggccaatact
gaaaccatacgctatgtgcttgaacacagtggcgctaaggctatttttgtcggcaagcta
gaccactggagcgagcaagaagaagccattggtggcgacttgcttcgcttagccatgccc
tatgaaaccatgccatctcaatatcaatgggatcaactgctgaatttaggctccccctta
gtagaagcgcctaccactaagccagatgatgtcatgacgcttatctatacctcgggctcc
accggcaaacccaagggtgtcattcaaacatttgccagctatggctggacctgtgaagcc
gtggtcagagatttacgcactaacactcaagacagcttactctcatacctacccttagcg
catatcaccgaacgtgtggcggttgaaggctcatcatttctttcaggttcgaccgtgtct
ttcgttgaaagtttagatacctttgtggcagatgtgaaacgagccaagcctacggtattc
ttctctgttccacgattgtggaccttgttccatctgaatatcatcaataagattggcgct
agcagacttaaattactgctgaggatccctatcgtcagcagcatagtgaaacacaagatc
caaaaggaattaggcttagaacactgccgtcttttgggctcgggttctgcaccaattccg
gcatctctcatccagtggtatcacaatctaggcatggatatctgtgaagcttggggcatg
acggaaaactgcgcttactccatcatcaactaccctttcgatgccaataaaattggctct
gtgggccgccctgttgaaggctgtctagtgcgccggggcaatgatggtgagttgctatta
aaaaccccaggactgatgacaggctattacctgcaagaggaagccaccaaagccgcattc
gatgatgatagctacttccgcaccggtgatatttgtgaaatcgatgccgatggctgcatc
agcatcacgggacgcgtcaaagataacttcaaaacctctaaaggcaagtatgtcgcccca
gtgcccatcgaacgtaaattagcgcaagactcacacatagaacttatttgtgtgattggc
tcgggcttacctcatcctgtggccttagtgcagctctcagaaggcgcatcactgcaggcc
cgtgaagaagtacgtacctcgattaaggccaccttagatgctgtgaatccacaccttgaa
tcccatgaacacgtcgatgccgtggtggtggtgaaagagccttggaccatagaaaatgat
gtactgacacccacacttaagattaagcgtcacgtgctagagaaagcctttagcgagaag
gtagacggggttagaggcgcccaagttcgttgggaagatgaattataa
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