Shewanella denitrificans: Sden_3620
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Entry
Sden_3620 CDS
T00344
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn03030
DNA replication
sdn03410
Base excision repair
sdn03420
Nucleotide excision repair
sdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sden_3620
03410 Base excision repair
Sden_3620
03420 Nucleotide excision repair
Sden_3620
03440 Homologous recombination
Sden_3620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdn03032
]
Sden_3620
03400 DNA repair and recombination proteins [BR:
sdn03400
]
Sden_3620
Enzymes [BR:
sdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sden_3620
DNA replication proteins [BR:
sdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sden_3620
DNA repair and recombination proteins [BR:
sdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Sden_3620
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sden_3620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Sld7_N
Motif
Other DBs
NCBI-ProteinID:
ABE56895
UniProt:
Q12I31
LinkDB
All DBs
Position
4339054..4341819
Genome browser
AA seq
921 aa
AA seq
DB search
MPIIPENPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLMSRYHPSHIAV
VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIAPLHRIIHALGLPLISIEGVEADDVIGT
IAKRASAEGRATLISTGDKDMAQLVNEHVTLINTMTDTIMGPEEVATKFGVGPELIIDFL
ALMGDKSDNIPGLPGVGEKTALAMLNGVGSVEKLLADPQSVLEVGFRGAKTMPAKIIDNA
DMLKLSYQLATIKTDVELDPDWDLLAVKPHNKDELIACYGEMEFKRWLAEVLDNKAPTQV
KTSSNAESDEVMAPVEAISAKYHTILTLDDLDTWIAKLSQAKLIAIDTETTSLNYMDAKL
VGISFAIEAGEAAYLPLAHDYLDAPSQIDMATALEKLRPLLESDNPAKVGQNLKYDISIF
ANVGIKLKGVHFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEDVAGKGAKQLTFNQ
IDLDTAAPYAAEDADITLRLHQHLWPRLEKEPELAQVFTELELPLIQVLSDIERQGVLID
PMLLSQQSDELAQKIDKLELEAYEIAGEKFNLGSPKQLQVLFFEKLAYPIIKKTPKGAPS
TAEEVLVELALDYPLPKIILAHRSLAKLKSTYTDKLPLMVNGTTGRVHTSYHQANAATGR
LSSSDPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDKGLLTAFA
EGKDIHRATAAEVFGAHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRNEAQTYI
DTYFARYPGVLQYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPM
QGTAADIIKKAMINIANWIKTETQGEITMIMQVHDELVFEVDEAQAETLKAKICLLMAQA
ADLDVTLLAEAGIGNNWDEAH
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgccaataatcccagaaaaccccctcgtccttgtggatggttcttcctatctttatcgc
gcttactacgcaccaccacatctaaccaattctaagggtgaagccacgggagcggtatac
ggtgtagtcaacatgcttcgcagcttaatgagccgttatcatccgagtcacattgccgtg
gtatttgatgccaaaggtaaaacatttagaaatgatatgtacagcgagtacaaggcgcag
cgcccacccatgcctgatgacttacgcagtcaaatcgcccctttgcatagaataatccac
gcattaggcctaccgcttatcagtatcgaaggggttgaagccgatgacgtcataggcacc
atagccaagcgtgccagcgccgaaggccgtgccaccttgataagcacaggtgataaagac
atggcgcagctggttaatgaacatgtcaccctgataaataccatgacagacaccataatg
gggcctgaagaagtggccactaaatttggtgtgggccccgagcttatcatagatttctta
gccctgatgggcgataaatccgataacattccaggtctaccgggtgttggtgaaaaaacc
gcactggccatgttaaacggagttggcagtgtagaaaaactattagccgatccccaaagc
gtccttgaagtgggctttaggggcgctaaaaccatgccagcaaaaattatcgacaatgct
gacatgcttaaactctcctaccaactggccaccatcaaaaccgatgtggagttggatccc
gactgggatcttcttgcggtgaagccgcataataaagatgagcttatcgcctgttatggt
gaaatggagtttaaacgctggctagctgaagtattagataataaagcgccaacccaagtt
aaaacatcatccaatgctgagtctgacgaagtgatggctcccgttgaggccattagcgcc
aagtatcacaccatcttaaccctcgatgacttagatacttggattgcaaagttaagccaa
gccaaactcattgccatagacactgagaccaccagcttaaattacatggatgctaagctc
gtggggatttcattcgccatcgaagcaggcgaagccgcatatttgccgttagcccatgat
tatttagatgctccgagccaaatagacatggcaaccgcccttgagaagctgcggccgcta
ctggaaagtgacaacccagctaaagtaggccaaaacttaaagtacgatatcagcattttc
gctaatgtgggcatcaagcttaaaggcgtgcacttcgataccatgctggagtcctatgtg
tttaattcggtcgcctcccgccatgatatggatgggcttgccttaaagtacttaggccat
aagaacattagcttcgaggacgttgccggtaaaggcgcgaaacagctgacctttaatcaa
atcgatttagacaccgccgcgccctatgccgcagaagatgccgatattaccttacgtctg
catcaacatttatggccaaggcttgagaaagagccagaactggcccaagtgttcaccgaa
ttagaattaccacttattcaagttttatctgatatcgagcgccaaggggtacttatagac
cctatgctattaagtcagcaaagtgatgaactagcgcagaagattgataagttagaactt
gaggcctatgagatagccggtgagaaatttaacctagggtcgccaaaacagttgcaagtc
ttattctttgaaaaattggcataccctatcatcaagaagacccccaaaggtgcgccatcg
acggctgaagaggtgttagtcgaactcgccttagactaccccttgcccaagattatctta
gctcatcgcagcttagccaaacttaagagtacctacacggacaaactgccgttaatggtc
aatggcaccacggggcgagtgcataccagctaccatcaagcgaatgccgcgacggggcgc
ttatcatcgagcgatccaaaccttcaaaacattccaatccgcactgaagaaggtcgccgc
atcagacaagcctttatcgcgccggctgggcgtaaaattttagcggcggattattcacaa
attgaattaaggatcatggcacatttatcccaagataaaggcctactcaccgcctttgcc
gaaggtaaagatattcatagagccaccgcagcggaagtctttggcgcacattttgaagaa
gtcaccacagagcaaaggcgccgtgcaaaagccgtcaacttcggtttgatttatggcatg
tcggcctttggcttggctaagcagctggatattcctcgcaacgaagcacaaacctatatc
gacacttatttcgcccgctatcctggggtattacagtatatggaagagacccgtgctagc
gcagccgaattaggctacgtatcgaccctgtttggccgccgcctgtatctaccagaaatt
cgcgatcgtaacgccatgcgccgccaagctgcagaaagggctgccattaatgccccaatg
caaggcacggccgctgacatcatcaagaaagccatgatcaacatagcgaactggatcaag
accgagacccaaggtgaaataaccatgatcatgcaagtacacgatgaactggtgtttgaa
gtggatgaagctcaagctgaaacattaaaagccaaaatttgcttactcatggcacaagcc
gccgatttggatgtcaccctattggcagaagcgggcattggtaataattgggatgaagcc
cactag
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