Shewanella denitrificans: Sden_3633
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Entry
Sden_3633 CDS
T00344
Name
(GenBank) RNA polymerase sigma factor, FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
sdn
Shewanella denitrificans
Pathway
sdn02020
Two-component system
sdn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Sden_3633
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sden_3633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdn03021
]
Sden_3633
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
sdn02035
]
Sden_3633
Transcription machinery [BR:
sdn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sden_3633
Bacterial motility proteins [BR:
sdn02035
]
Flagellar system
Flagellar assembly proteins
Stator
Sden_3633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
ABE56908
UniProt:
Q12I18
LinkDB
All DBs
Position
complement(4353770..4354480)
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AA seq
236 aa
AA seq
DB search
MNLDGQLAYQTVSEEPALQRLSEDQLIVQYLPLVKRAVLQLRSHCGAMLSLEDMEQIGMM
ALIESSRRYPGEFDNGFISFAGQRIRGAILDELRRQDWRPRPVRQQAHILNDKVRELSRT
LGREPTDTEVATGLGLSPEAYRESLYATQAESMKSLDEMLTIGEQPADKHNEVERFMLKK
TLIKAMTKLNEREQLILSLYYHHELNLKEIALTLGLTETRICQLHKQAVAKLQSLI
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcgatggtcaattagcttaccaaaccgtcagtgaagaacctgcgttacagcgt
ttatccgaagatcagttaatcgtacagtatttgccgttggtgaaacgtgcagtgctgcaa
ctgcgcagtcattgcggtgccatgctgtcacttgaggatatggagcaaatcggcatgatg
gcacttattgaatcctcaaggcgatatcctggtgagtttgataatggatttatttctttt
gcggggcagcgaatacgtggagctattctggatgaattacgccgtcaggattggcgtcca
aggcctgtgcgtcagcaggcgcacattttgaatgacaaagtccgagaattgagccgaact
ttaggacgagagccgaccgatactgaggttgcgactgggcttggactctctccagaggcc
tatcgcgagagcttgtacgccactcaggcggagtcaatgaaaagcttggatgagatgctg
actattggcgagcaacccgcagataaacacaatgaagttgagcgtttcatgctcaaaaaa
accttgattaaagccatgacgaaattaaatgaaagagaacagttaattctgtcgctttac
tatcatcatgaacttaatttaaaagagattgcattaacactgggattgactgagacccgc
atttgccagcttcacaagcaggctgtggcgaaattgcaaagccttatataa
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