Shewanella denitrificans: Sden_3661
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Entry
Sden_3661 CDS
T00344
Name
(GenBank) sigma-54 factor, interaction region
KO
K10943
two-component system, response regulator FlrC
Organism
sdn
Shewanella denitrificans
Pathway
sdn02020
Two-component system
sdn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Sden_3661
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sden_3661
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
sdn02022
]
Sden_3661
02035 Bacterial motility proteins [BR:
sdn02035
]
Sden_3661
Two-component system [BR:
sdn02022
]
Other families
FlrB-FlrC (polar flagellar synthesis)
Sden_3661
Bacterial motility proteins [BR:
sdn02035
]
Flagellar system
Flagellar assembly proteins
Others
Sden_3661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
Mg_chelatase
AAA
AAA_19
AAA_2
AAA_3
MCM
HTH_30
nSTAND3
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ABE56936
UniProt:
Q12HZ0
LinkDB
All DBs
Position
complement(4377148..4378452)
Genome browser
AA seq
434 aa
AA seq
DB search
MDNLKIRLVDFTLSVATLERLKSQGFTLWQQGNTVPWLTIINLSQFKPSQLAGHLSGFSS
KNFLALLAPEQGELAAAAMQSGVQDYLLLPVEDEQLIASISRLHRLEQPDPKLIVAAPVS
RQLLMLAHRAATTEATVLLTGESGTGKEPLANYIHRHSSRAHKPFIAINCAAIPETMLES
ILFGHTKGAFTGASSDKAGKFEQANGGSLLLDEIAEMPLALQAKLLRVLQEREVERLGGS
QAIPLDIRVIAATNKDLRQAVENGTFREDLFYRLDVLPLKIFPLRDRKTDILPLAEHFLH
RFDTQGVECYFSRQAREALLAYDWPGNVRELENCIQRALVMRRGQAIQAAELGLSVGCEI
QLPESHSPISGLKESKRQAEFQFIVDILRRVQGNRSQTAAELGMTTRALRYKLAQMRDAG
IDVDQLLQRAGNAA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggataaccttaaaatacgtttggttgattttacgctttcagtagcaaccttagaacga
ctaaaatcccaaggatttacactgtggcaacaaggaaatacggtaccttggttgaccata
ataaacctttctcaatttaagccgtctcaattggcggggcatttgagtggtttctcaagt
aaaaacttcttggcattactcgctcccgaacaaggggagttggctgcggctgccatgcag
tcaggcgtacaagactatttactgcttcctgttgaagatgagcagctcattgcttcaatt
tcacgtctacatcgcttggagcaaccggaccctaaactcattgttgccgctcccgttagc
cgacagttgcttatgttagctcatagagcagccaccactgaggccactgtactactcacg
ggtgaaagtggtacaggtaaagagccgctggccaattatattcatcgtcattcaagtcgc
gcccacaagccttttatcgccatcaattgcgctgctattcccgaaaccatgctcgaatct
attctctttggtcacactaagggggcgtttacgggggcgagtagcgataaagccggtaaa
tttgagcaagccaacggcggctcgctgttgctggatgaaattgctgaaatgccgctggct
ctgcaagctaaattactgcgggtgctacaagagagagaagttgaacgtttaggtggcagt
caggctattcccctcgatattagagtgatagcggcaaccaataaagatttacgtcaagcg
gttgaaaacggcacttttagagaggaccttttctatcgtttggatgtgctgccactaaaa
atctttccccttagggacagaaaaaccgacattttgcccttagccgagcattttttacat
cgctttgatacccaaggtgtggagtgttacttcagccgtcaggcgcgcgaagctttactg
gcttacgattggccggggaatgtccgtgagctggaaaattgcattcaacgagccttggtt
atgcgccgtggccaagctatccaagcggccgaactcggtttgtcagtgggctgtgaaatt
caattaccagaatctcatagccctatttctgggctgaaagaatctaaacgccaagccgaa
tttcaattcattgtcgatattttaaggcgtgtgcaaggaaaccgcagtcagactgctgcg
gaacttggcatgaccacaagagcgctaagatacaagttggctcaaatgcgagatgcgggg
attgatgtcgatcagctactgcagcgtgcgggtaatgcagcttga
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