Shewanella denitrificans: Sden_3736
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Entry
Sden_3736 CDS
T00344
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn00061
Fatty acid biosynthesis
sdn00071
Fatty acid degradation
sdn01100
Metabolic pathways
sdn01212
Fatty acid metabolism
sdn02024
Quorum sensing
sdn04146
Peroxisome
Module
sdn_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Sden_3736
00071 Fatty acid degradation
Sden_3736
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Sden_3736
09145 Cellular community - prokaryotes
02024 Quorum sensing
Sden_3736
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sdn01004
]
Sden_3736
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sdn04147
]
Sden_3736
Enzymes [BR:
sdn01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Sden_3736
Lipid biosynthesis proteins [BR:
sdn01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Sden_3736
Exosome [BR:
sdn04147
]
Exosomal proteins
Exosomal proteins of breast milk
Sden_3736
Exosomal proteins of breast cancer cells
Sden_3736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ABE57009
UniProt:
Q12HR7
LinkDB
All DBs
Position
complement(4499499..4500983)
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AA seq
494 aa
AA seq
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MNNLIDGLGLSLQAHGERHFIYIEDGEYRSLSFAEIYRLVQQLTDELKGFGVCRGMAVGI
GGDNSLSWVLYDLALTQLGAVVVGLPQSLFNDNSDLVDVFGLYALLLSDGYYHQYKAERT
SVINIDIPLVEQSAVLAATGAGFTDDEISVTFSSGSSGNIKGLVISKRGADAQIRAYKDM
FDAEDGRLIVYMPFTSYQQRLYIYGAIAFGFDLVLVPPYRLPEGLVRMQPTVLMGPPVLF
ETLARQLASADSATVQAALGGKMHIMTTGMAKIRQDAIDFFHHHGIRLCEGYGLGECGSV
CVNTLGAEVPNSVGKPLPGTLVRIAQDGEILVAKDDPLLSRYLVEDDNPMDVQDTRLQDG
WFHTGDLGRLDELGNLYIEGRKKTTLVLKDGRKFQPEPIEKALEQAVEVKRAAILLHANQ
QGFLIAIEPHLVDVVQVPAVVASVKQWFTNYTGGSYLLVDVQVATCEFTSGNGLLLRNLK
LNRRAIAQHFGWEV
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaataacttaattgatggtttgggtctgagcctgcaagcgcatggtgagcgtcatttt
atctatatagaagatggtgagtatagaagtttgagttttgccgagatctatcgtctggtg
cagcaacttactgacgagttgaaaggttttggtgtgtgccgtgggatggcggtaggtatc
ggcggtgacaattcactcagttgggtgttgtacgatttggcactaactcaattgggggca
gtagttgtcggtttaccacaatccttatttaatgataacagtgacttagttgatgttttt
ggtctttatgcactgctattgtctgatggctattaccatcagtataaagccgagcgaaca
agcgttatcaacatcgatattcctctggttgagcaatcagccgtattggccgctactggg
gcaggatttacggatgatgagatctcggtaacattttcatcaggctctagtggcaatatt
aaaggtttggtgatttcaaagcgtggtgcagatgcacagatccgcgcgtacaaagacatg
tttgatgcagaagatggtaggttgattgtctacatgccttttaccagttatcagcaacga
ctctatatatatggcgccatcgcttttggttttgatcttgttttggtgcccccctatcgt
ttgcctgagggactggttcggatgcaaccgaccgttttaatgggcccaccagtgctgttt
gaaaccttggctaggcagttggcgagtgctgatagtgcaactgttcaggctgctttgggt
ggaaaaatgcacatcatgaccacaggtatggccaaaattcgtcaagatgccatcgatttt
tttcatcatcatggtattcgtttatgcgaaggctatggtttaggcgaatgtggatctgtg
tgcgtcaatactcttggggccgaagtgcccaattcagttggaaaacctttgcctggcacc
ttagtgcggatagcacaagatggcgaaatacttgtagcgaaagatgacccgctactcagt
cgttatcttgttgaagatgataatccaatggatgtccaagatacacgcttacaggatggg
tggtttcatactggtgatttgggacgacttgatgagttgggtaacttatatattgaaggc
cgtaaaaagaccactttggtgttaaaagatggcagaaaattccaacccgagcccattgaa
aaggccttggaacaggccgttgaagttaagcgcgcagccattttattacatgctaaccag
caaggatttttaatcgctatcgaaccgcatctcgtcgatgttgtgcaagtgcccgcagtt
gttgccagtgtaaaacaatggtttacaaattatactggtggatcctatttacttgttgat
gtgcaggtagccacttgcgagtttacttcagggaatggcttgctactgcgtaatcttaag
ttgaaccgtcgtgccattgcccagcatttcggctgggaagtatga
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