Shewanella denitrificans: Sden_3774
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Entry
Sden_3774 CDS
T00344
Name
(GenBank) tRNA modification GTPase trmE
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdn03016
]
Sden_3774
Transfer RNA biogenesis [BR:
sdn03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
Sden_3774
Prokaryotic type
Methyltransferases
Sden_3774
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MnmE_helical
TrmE_N
MMR_HSR1
FeoB_N
RsgA_GTPase
Ras
ABC_tran
Dynamin_N
AIG1
AAA_28
Gtr1_RagA
DUF4702
Roc
MMR_HSR1_Xtn
Arf
SRPRB
AAA_29
Motif
Other DBs
NCBI-ProteinID:
ABE57047
UniProt:
Q12HM9
LinkDB
All DBs
Position
complement(4541643..4543043)
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AA seq
466 aa
AA seq
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MAAFSFEKLAGIPVTTDTIVAQATAPGRGGVGIIRISGDLATNVAMAVLGKVPKTRYADY
CDFKDADDRVIDQGIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMQVSGVRIAKP
GEFSEQAFLNDKLDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVEQVTNLRL
YVEAAIDFPDEEVDFLSDGKIANALYRIIAKLDTVQDSAKQGSIIREGMKVVIAGRPNAG
KSSLLNALAGKESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTLDTVEKIGIER
AWAEIATADRVLFMVDGTTTDAVDPHDIWPDFIDRLPTRLGVTVVRNKADLTGESLEKSQ
EQGFDVYRISAKTGLGVEELKQHLKSLMGYQSNLEGGFIARRRHLEALELAASHLQLGKE
QLEVYLAGELLAEELRMAQMALSEITGKFTSDDLLGKIFSSFCIGK
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggccgccttttcctttgaaaaattagcaggtattcccgtgacaacagacactatcgtg
gcacaagccacagcgcctggccgaggcggcgtaggcatcattcgtatttctggtgattta
gccactaatgtggccatggcagtgttgggtaaagtgcctaagacacgttacgccgattac
tgcgactttaaagatgccgatgacagggtgatagatcaaggtatagcgctgttcttcaaa
gggcccaattctttcacaggtgaagacgtattagaactgcaaggtcacggcgggcaaatc
gtgctggatatgctgatcaaacgtgtgatgcaagtcagcggcgtgcgcatagctaaaccc
ggtgagttcagtgagcaagccttcttaaatgataagttagacttaactcaggccgaagcc
atcgccgatctaatcgatgccaccagcgagcaagccgccaagagtgctttgcaatcctta
cagggtgaattctcaaaggaagtgcatgagctggttgagcaagtgactaacctgcgcctt
tatgtggaagcggcgatagatttccccgatgaagaagtggattttttatctgatggtaaa
atagccaatgccctttaccgtattatcgcaaagctcgacacagtacaagacagcgctaag
caaggttctatcatacgtgaaggcatgaaagtggttattgctgggcgccccaatgccggt
aaatcaagcttgttaaatgccttagcagggaaagagtctgccatagttacagaaatagcg
ggcaccacccgtgatgtactgcgtgaacacattcatttagacggcatgccgctgcacatt
atcgatactgcaggccttagggataccttagatactgtagagaaaattggtattgagcgc
gcctgggccgagatagccaccgccgacagagtcttgtttatggtcgatggtactaccaca
gatgccgtcgacccccatgatatttggcctgattttattgaccgcttacccacaagactt
ggggtcactgtggtgcgtaacaaggctgacttaactggcgaatcgctcgagaagtctcaa
gagcaaggctttgatgtttaccgcatttcggcgaaaaccggtttaggcgttgaagaactc
aaacagcacttaaaatcattaatgggttaccagagtaatcttgaaggtggttttatcgct
cgtcgccgtcatttggaagccctagaattagccgccagccacttacaactcggtaaagaa
caactagaggtctaccttgcaggagaactgctggccgaagaactgcgtatggcccagatg
gccttatctgaaattaccggtaaattcacctcagatgatttgctcggtaagatttttagc
tccttctgtatcggtaaataa
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