Sulfitobacter donghicola: SD1155_00115
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Entry
SD1155_00115 CDS
T05893
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sdo
Sulfitobacter donghicola
Pathway
sdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD1155_00115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdo03019
]
SD1155_00115
03009 Ribosome biogenesis [BR:
sdo03009
]
SD1155_00115
Enzymes [BR:
sdo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SD1155_00115
Messenger RNA biogenesis [BR:
sdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SD1155_00115
Ribosome biogenesis [BR:
sdo03009
]
Prokaryotic type
rRNA helicases
SD1155_00115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
CMS1
Cas3-like_C_2
Flavi_DEAD
AAA_19
INTS5_N
Motif
Other DBs
NCBI-ProteinID:
QAV30060
LinkDB
All DBs
Position
complement(19511..21040)
Genome browser
AA seq
509 aa
AA seq
DB search
MQNFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPL
IEKVVGEQGVQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQIKALKKGP
QIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTML
FSATMPKAIQTLVQQFMKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANN
RRMTALRPPHRKEVLKAREDDIKEKVQNWMSKDNEPRLQRISTELLEEYNDVELVASLLQ
ELVEANDEVEVQLTFEKPLSRKGRNSKGNNNSRRGNNKRGGGKFDNKNRRSSKGFASKKN
GNKKFDRKDKSSQGSNKTMKGRTFADHQK
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttaaagaactagggatttcggataaaacggttcaaacacttgaatctatg
gggtttaaagagccaactcctatccaaaaagatagtatcccttatgcgttagaaggacat
gacatccttggacaagcccaaacaggtactggtaaaacgggtgcgtttggtataccttta
attgaaaaggttgttggagaacaaggtgttcaatcgttaattctagcgcctactagagaa
ttagctatgcaagttgcagagcaattaaaagtatttagtaaaggtcaaaacgtacaagtt
gttacggtatttggtggtatgcctatcgagcgccaaattaaagccttgaaaaaaggacca
caaattgttgtaggtacaccaggacgtgtaattgaccatttaaatagacgcacattaaaa
actaatgacattcatacacttatcttagacgaagcggatgaaatgatgaacatgggattc
atcgatgatatgagatttatcatggataaaattccagctgaacaacgtcaaacaatgctt
ttctcagctactatgccaaaagctattcaaacattagtacaacaattcatgaaaacacca
aaaattattaaaacaatgaataatgaaatgtccgatccacaaatcgacgaatactataca
attgttaaagaattagagaagttcgacacattcactaatttcttagacgtacatcaacca
gaacttgcaattgtgtttggtcgtacaaaacgtcgtgtagacgaattaacaagcgcgtta
ctttctaaaggatataaagctgaagggttacatggtgacatcacgcaagctaaacgttta
gaagtattgaaaaaattcaaaaatgatcaaattgacattcttgtagcaacagatgtagca
gcacgtggtttagatatctcaggcgttagtcatgtttataactttgacattcctcaagat
actgaaagttatacacacagaattggacgtactggtcgtgctggtaaagaaggtatcgca
gttacttttgtaaatccaattgaaatggattacattcgacaaatcgaagatgctaacaat
agaagaatgacagctttaagaccgcctcatcgtaaagaagtattgaaagcaagagaagac
gatattaaagaaaaagttcaaaactggatgtctaaagacaatgaacctcgtttacaaaga
atttcaactgaactacttgaagaatacaatgatgttgagttagttgcatcattattacaa
gagttagtagaagcaaatgatgaagttgaagttcaattaacttttgaaaaaccactttca
cgtaaaggtcgcaattcaaaaggcaacaataactctagaagaggcaacaataaacgcggt
ggcggtaagtttgataataaaaacagacgttcatcaaaaggttttgcttctaagaaaaat
ggtaacaagaaatttgaccgcaaagataaatcatctcaaggttcaaacaaaacaatgaaa
ggtcgcacatttgctgaccatcaaaaataa
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