Sulfitobacter donghicola: SD1155_05470
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Entry
SD1155_05470 CDS
T05893
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sdo
Sulfitobacter donghicola
Pathway
sdo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SD1155_05470 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdo03021
]
SD1155_05470 (rpoC)
03400 DNA repair and recombination proteins [BR:
sdo03400
]
SD1155_05470 (rpoC)
Enzymes [BR:
sdo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SD1155_05470 (rpoC)
Transcription machinery [BR:
sdo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SD1155_05470 (rpoC)
DNA repair and recombination proteins [BR:
sdo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SD1155_05470 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QAV31046
LinkDB
All DBs
Position
1123280..1126903
Genome browser
AA seq
1207 aa
AA seq
DB search
MIDVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFRDYYDKYPGQFVAKMGAEGIRDLLS
EIDLDEELKILRDELESATGQRLTRAIKRLEVVESFRNSGNDPAWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKE
MALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVWDVLEEVIVEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGTIYNDTNEVLKAYANGYVHLHTRIGVH
ASSFNNPTFTEEQNKKILATSVGKIIFNEIIPDSFAYINEPTQTNLEGTTPDKYFVDPTE
LGEGGLKEFFETKELIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGI
TVGVSDIVVLPDKKDILDEHEKLVERVTKQFNRGLITEEERYNAVVEIWTDAKDQIQGEL
MQSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI
EPFIERIEGRYSKETIRHPETDEIIIRPDELITAEIAKKITDAGIEQMYIRSAFTCNTRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGENETRSYLASGTSRLKVEVGQ
SVERGEVLTEGSIEPKNYLSVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHNFTDANRDAFKERKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDVQYDKNVAPVASSE
EEVEVTE
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataatttccattatatgaaaataggattagcttcacccgaaaagatt
cgttcatggtcttatggtgaagttaagaagcctgaaacaattaactatcgtacgttaaaa
cctgaaaaagacggtcttttctgtgaaagaatatttggaccaactaaagactgggaatgt
agttgcggtaaatacaaacgtgtacgctataaaggtatggtttgtgatagatgtggtgtt
gaagtaacgaagtctaaagttcgtcgtgaaagaatgggacacatcgaattagcagcacca
gtatcacacatttggtacttcaaaggtattccaagtcgtatgggacttttattagatatg
tctccaagagcattagaagaggttatttactttgcttcttatgttgttgttgatccaggc
ccaacaggtttagaaaagaaaactttattatctgaagcagaattcagagattattatgat
aaatatccaggtcaattcgtagctaaaatgggtgctgaaggtatcagagacttattatct
gaaattgacttagatgaagaactaaaaatcttacgtgatgaattagaatctgcaacagga
caaagacttactcgtgctattaaacgtttagaagttgttgaatcattccgtaactctggt
aatgatccagcatggatgattttagatgtacttcctatcattccacctgaaattcgtcca
atggttcaattagatggtggacgttttgctacaagtgacttaaacgatttatatagacgt
gttattaaccgtaataaccgtttgaaacgtttattagatcttggtgcaccaggtatcatt
gttcaaaacgaaaaacgtatgttacaagaagctgtagatgctttaatcgataatggtcgt
cgtggccgtcctgtaactggaccaggtaaccgcccattaaaatcattgtcacatatgtta
aaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgactattcaggt
cgttccgttatcgcagtaggtccaagtctgaaaatgtatcaatgtggactacctaaagaa
atggcgcttgaattatttaaacctttcgttatgaaagagttagttcaacgtgaaattgca
acaaatatcaaaaatgctaaaagtaaaattgaacgcatggatgatgaagtttgggacgtt
ttagaagaagttatcgtagaacatccagtactacttaaccgtgcgcctacgcttcacaga
ttaggtatccaagcatttgaaccaacattagtagaaggtcgtgcaatccgtctacaccca
cttgttactacagcatataacgctgactttgatggtgaccaaatggcggttcacgttcca
ttatctaaagaagcgcaagctgaagcacgtatgttaatgttagctgctcaaaatatctta
aaccctaaagatggtaaaccagttgttacaccatctcaggatatggtattaggtaactac
tacttaacacttgaacgtaaagacgcagttaatactggtacgatctataatgatacaaac
gaagtattaaaagcttatgcaaatgggtatgttcacttacacactagaattggtgttcat
gcaagctcattcaataatccgacattcactgaggagcaaaataagaaaatcttagctaca
tcagtaggtaaaattatctttaatgaaatcattcctgattcatttgcttatattaatgag
ccaactcaaactaaccttgagggtacaacaccagataaatactttgttgatccaacagag
ttaggtgaaggcggattaaaagaattctttgaaactaaagaattaattgaaccattcaat
aaaaaattcttaggtaatatcattgctgaagttttcaacagattcagtattactgataca
tctatgatgcttgaccgtatgaaagacttaggattcaaattctcatctaaagcaggtatt
actgtaggtgtttctgatatcgtggtattaccagataaaaaagatatcctagatgaacat
gaaaaattagttgaacgtgtgactaaacaattcaatcgtggtttaatcactgaagaagaa
agatacaatgctgtcgttgaaatttggacagatgctaaagatcaaattcaaggtgaatta
atgcaatcacttgaaaaaacaaacccaatcttcatgatgagtgactctggtgcccgtggt
aacgcatctaactttactcagttagctggtatgcgtggattaatggctgcaccatcagga
aaaatcattgaattaccaatcacttcatcattccgtgaaggtttaacagtgttagagtac
ttcatttctactcacggtgcgcgtaaaggtcttgccgatacagcacttaaaacagctgac
tcaggttaccttactcgtcgtcttgttgacgttgcgcaagatgttattgtacgtgaagaa
gattgtggtactgaccgtggcttacttgtttctgacatcaaagaaggtacagaaatgatt
gaaccattcattgaacgtatcgaaggacgttattcaaaagaaacaattcgtcaccctgaa
acagatgaaattattattcgtccagacgaattaattactgcggaaatcgctaagaaaatt
actgatgctggtatcgaacaaatgtatatccgctcagcattcacttgtaatacacgtcat
ggtgtatgtgaaaaatgttatggtaaaaaccttgcaacaggtgaaaaagttgaagttggt
gaagcagttggtacaattgctgcccaatcaatcggtgaaccaggtacacagcttacaatg
cgtaccttccatacaggtggggtagccggaagcgatatcactcaaggtcttccacgtatc
caagagatctttgaagcccgtaaccctaaaggtcaagcggtaatcactgaaatcgaaggt
gtagtagaagatattaaattagcgaaagaccgtcaacaagaaattgttgttaaaggtgaa
aatgaaactagatcatatctagcttcaggtacttctagacttaaagtggaagtaggacaa
tcagttgaacgtggtgaagtattaacagaaggttctatcgagccgaaaaactacttatca
gttgctggtttaaatgctacagaaagctacttattaaaagaagtacaaaaagtttaccgt
atgcaaggtgttgaaattgatgataaacacgttgaggttatggttagacaaatgttacgt
aaagtgcgtatcatcgaagcaggagatactaagttattacctggttcattagttgatatt
cacaactttactgacgctaacagagatgcatttaaagaacgtaaacgccctgcaactgct
aagccagtattgcttggtattacaaaagcttctcttgaaacagaaagcttcttatctgca
gcttcgttccaagaaacaactcgtgttcttactgatgcagctattaaaggtaaacgcgat
gacttacttggtcttaaagaaaatgttattattggtaaacttatcccagctggtacaggt
atgagacgttatagtgacgttcaatacgataaaaatgtagcgccagttgctagttctgaa
gaagaagtagaagttactgaataa
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