Sulfitobacter donghicola: SD1155_08595
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Entry
SD1155_08595 CDS
T05893
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sdo
Sulfitobacter donghicola
Pathway
sdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD1155_08595 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdo03019
]
SD1155_08595 (rny)
Messenger RNA biogenesis [BR:
sdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SD1155_08595 (rny)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
Glt_symporter
Motif
Other DBs
NCBI-ProteinID:
QAV31629
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Position
1772815..1774374
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AA seq
519 aa
AA seq
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MNLLGLLLILLGIILGVVVGYVVARNLLHQKQVQARQTADDIVNQAHKEADNTKKEKLLE
AKEENQILREQTENELRERRGELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEE
RQQQVDAKESSVQTLIMKHEQELERISGLTQEEAVNEQLQRVEEELSQDIAILVKEKERE
AKEKVDKTAKELLATTVQRLAADHTTESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVEKARKEVDDIIRD
AGEQATFEINVHNMHPDLVKILGRLNYRTSYGQNVLKHSIEVAHLSGMLAAELGEDVTLA
KRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYGENETIINAIHSHHGDVEPTSIISILVA
AADALSAARPGARKETLENYIRRLERLETLSESYDGVEKAFAIQAGREIRVVVSPEEIDD
LKSYRLARDIKTQIEDELQYPGHIKVTVVRETRAVEYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
gtgaatttattaggcctcctactcattttgctgggtataattctaggcgttgttgtaggg
tatgttgttgcccgaaatttattgcatcaaaaacaagttcaggctagacaaacagccgat
gacattgttaatcaagcacacaaagaagcagacaacactaagaaagaaaaattgcttgaa
gcaaaagaagaaaaccaaattttaagagaacaaactgaaaatgaactacgtgaaagacgt
ggcgaattacaaagacaagaaacccgacttcttcaaaaagaagagaacttagagcgaaaa
tctgatctattagataaaaaagatgagattttagagcaaaaagaatcaaaaattgaagaa
agacaacaacaagtagatgcaaaagagagtagtgttcaaacattaataatgaagcatgaa
caagaattagaacgcatctccggtctcactcaagaagaagctgtaaatgagcaacttcaa
cgagttgaagaagaactgtcacaagatattgcaatacttgttaaggaaaaagaaagagaa
gctaaagaaaaagtagataaaaccgcaaaagaattgttagctactacagtacaaagatta
gcagcagatcatacaactgagtcaactgtatcagttgtaaacttgcctaatgatgaaatg
aaaggtcgaataatcggacgtgaaggaagaaatattcgaacacttgaaacacttacggga
atcgatttaattatcgatgatactccagaagctgtcattttatctggttttgatcctatc
agaagagaaatcgctagaacagctttagttaacctagtttcagatggaagaattcatccg
ggacgcattgaagatatggtcgaaaaagctagaaaagaagtagacgatatcattagagac
gctggtgaacaagcaacattcgaaataaatgttcataacatgcatcctgacttagttaaa
atacttggccgtttaaattatcgtacaagttatggacaaaatgtgcttaaacattcaatt
gaggtagcgcatctatcaggaatgttagcagcagaattaggtgaagatgttactttagcg
aaacgtgctggtttacttcatgacgtaggtaaagcaattgaccatgaagttgaaggcagt
cacgttgaaataggtgttgaattggcgaaaaaatatggtgaaaacgaaacaatcattaat
gctattcattctcatcatggtgatgttgaaccaacatctattatctcaattttagttgca
gcagctgatgcattatcagcagctcgtcctggcgctcgtaaagaaacattagaaaattat
attcgtcgtttagagcgtttagaaacactttctgaaagttatgatggtgttgaaaaagca
ttcgcaattcaagcaggaagagaaatccgtgtggtcgtatctcctgaagaaatagatgat
ttaaaatcataccgattggctagagatattaaaactcaaattgaggatgaattacaatat
ccaggtcatatcaaagtgacagttgttcgagagactagagcagtagaatatgctaaataa
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