KEGG   Sphingomonas donggukensis: M9980_00385
Entry
M9980_00385       CDS       T08944                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
sdon  Sphingomonas donggukensis
Pathway
sdon03030  DNA replication
sdon03410  Base excision repair
sdon03420  Nucleotide excision repair
sdon03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sdon00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    M9980_00385 (polA)
   03410 Base excision repair
    M9980_00385 (polA)
   03420 Nucleotide excision repair
    M9980_00385 (polA)
   03440 Homologous recombination
    M9980_00385 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdon03032]
    M9980_00385 (polA)
   03400 DNA repair and recombination proteins [BR:sdon03400]
    M9980_00385 (polA)
Enzymes [BR:sdon01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     M9980_00385 (polA)
DNA replication proteins [BR:sdon03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     M9980_00385 (polA)
DNA repair and recombination proteins [BR:sdon03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     M9980_00385 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     M9980_00385 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 HHH_5 DprA_N DNA_polI_exo1 HHH
Other DBs
NCBI-ProteinID: URW75731
LinkDB
Position
complement(84248..87013)
AA seq 921 aa
MPHLYLVDGSGYIFRAYHRLPPLTNKHGEPVGAVYGYTTMLWKLVDELHTADGPTHMAVV
LDKSSKSFRNEMYDQYKAHRPPPPEDLVPQFPMIRDATRAFSLPCIDEEGWEADDLIASY
AKAALAQGWQVTIVSSDKDLMQLVEDGSLDLYDTMNNRRLGREAVIEKFGVEPAKLGEVL
ALMGDSVDNVPGVPGVGPKTAAKLILEHGDVEGVLAAAPDMKKGKLRDNLIEHADMARLS
RKLVTLACDVPLPHALEEMELQGIPDAPLRAFLEHHGFKSLLAKLSAVADAPVATPAVPG
APEAEADPPCDHDAYETVTDAARLDHWIQIARHQGFVAIDTETTGLDATRADLVGVSLAL
HPNLACYIPVGHGGSDMFAERPEQIDRAVVVAKLKELFEDPSVLKIGHNLKYDMIVLGRL
GIAVAPYDDTIVMSFDLDAGLHGHGMDELAATHLAHSCIAYKDVVGTGKKQLGFGEIDLK
SATRYAAEDADVTLRLWRRLKPRLTFEGGTRVYEMVDRPLPAVIAGMESAGVKVDPDLLA
RLSTDFAHQIAALEEQVHAIAGFKFTIGSPKQLGDVLFDKMGIKGGRKGKSGVYSTDVNE
LERIAADKDSPGREMVAKVLEWRQLSKLKSTYTDALQAQINPATGRVHTSYSLTGAQTGR
LSSTDPNLQNIPIRTEIGRQIRDAFVAEPGNVILAADYSQIELRLAAHIADVPQLRDAFA
RGDDIHNMTAQELFGEVNRDTRGRAKTINFAILYGISRWGLAGRLDVSADEAQGMIDRYF
ERFPGINRYIADTLTEAKARGYTETLFGRKTHFPRLKSPNPNERAGSERAAINAPIQGTS
ADIIKRAMARMGPALAAAGLPDTRMLMQVHDELVFELPEGDVTRATEVIRHVMATAAEPA
VTLSVPLGVDVGTGKSWGAAH
NT seq 2766 nt   +upstreamnt  +downstreamnt
atgccccacctctacctcgtcgacggctccggctatatcttccgcgcctatcaccgcctg
ccgccgctcaccaacaagcatggcgagccggtgggtgccgtctatggctatacgacgatg
ttgtggaagctggtggacgagctccacaccgccgatggccctacgcacatggcggttgtg
ctcgacaaatcgtcgaagtcgttccgcaacgagatgtacgaccagtacaaggcgcaccgc
ccgccgccgcccgaggacctcgtcccccagttcccgatgatccgcgacgccactcgcgcc
ttttcgctgccgtgcatcgacgaggaagggtgggaggccgacgatctgatcgccagctac
gccaaggcggcgctggcgcaggggtggcaggtgacgatcgtcagttcggacaaggatctg
atgcaactggtcgaggacggtagcctcgacctgtacgacacgatgaacaaccgccgcctc
gggcgcgaggcggtgatcgagaaattcggggtcgagcccgcgaaactgggcgaggtgctg
gccttgatgggcgacagcgtggacaatgtccccggcgtgcccggcgtcggccccaagacg
gcggccaagctgatccttgagcatggcgacgtcgagggcgtgctcgccgctgcgcccgac
atgaagaagggcaagctgcgcgacaatctgatcgaacatgccgacatggcgcggctgtcg
cgcaagctggtgacgctcgcctgcgacgtgccgctgccccatgcgctggaggagatggag
ctgcaggggatacccgacgcccccttgcgcgccttcctcgaacatcacgggttcaagtcg
ctgctggcaaaactgtccgcggtcgccgacgcaccggtcgcgacccccgccgttccgggc
gcaccggaggcggaggccgatccgccctgcgaccacgacgcctatgagacggtgacggac
gccgcgcggctcgatcactggatccagatcgcccgccaccagggcttcgtcgcgatcgat
accgagacgaccggcctcgatgccacccgcgccgatctcgtcggagtcagcttggcgctg
caccccaatctcgcctgctacattcccgtcggccatggcgggtcggacatgttcgccgaa
cggcccgagcagatcgaccgagccgtcgtcgtcgcgaagctgaaggagctgttcgaagac
cccagcgtcctaaagatcgggcacaatctgaaatacgacatgatcgtgctcgggcgttta
ggcatcgcggtcgccccctatgacgacacgatcgtgatgagcttcgatctcgacgccggg
ctgcacggccacggcatggacgaactcgccgccacccacctcgcgcacagctgcatcgcg
tacaaggacgtcgtcggcaccggcaagaaacagctcggcttcggcgagatcgacctgaaa
tcggcgacccgttacgctgccgaggatgccgacgtgacgctgcgcctgtggcgacggctg
aaaccgcggctgacgttcgagggcgggacgcgcgtgtacgagatggtcgaccgcccgctc
cccgcggtcatcgccggcatggagtcggcgggggtcaaggtcgatcccgatctgctcgcc
cgcctgtcgaccgacttcgcccaccagatcgccgcgctggaggaacaggtccacgctatc
gccgggttcaagttcaccatcggcagccccaagcagctgggcgacgtgctgttcgacaag
atggggatcaagggcgggcgcaagggcaagtcgggggtctattcgaccgacgtcaacgag
ctggagcggatcgccgccgacaaggattctccgggccgcgagatggtggcgaaggtgctg
gaatggcgccagctgtcgaagctgaaatcgacctataccgacgcgctccaggcgcagatc
aacccggctaccggccgcgtccacacaagctacagcctgaccggcgcgcagaccgggcgg
ctgtcctccaccgaccccaacctccagaacatcccgatccgcaccgagatcgggcgccag
atccgtgacgccttcgtcgccgagcccggcaacgtcatcctcgccgccgactattcgcag
atcgaattgcgcctggccgcgcacatcgccgacgtgccgcagctgcgcgacgcattcgcg
cgcggcgacgacatccacaacatgaccgcgcaggaattgttcggggaggtcaatcgcgac
acccgcgggcgtgccaagacgatcaacttcgcaatcctctacggaatcagccgctggggc
ctcgccgggcggctggacgtcagcgccgacgaggcgcagggcatgatcgaccgctatttc
gagcggttccccggcatcaaccgctacatcgccgacacgctgaccgaggcgaaggcgcgc
ggctataccgagaccctgttcgggcggaagacgcatttcccgcggctcaagtcccccaat
cccaacgaacgcgccggcagcgaacgcgccgcgatcaacgccccgatccagggcacgtcc
gccgacattatcaaacgcgcgatggcgcggatgggcccggcgctcgccgcggccggcctg
cccgatacacgcatgctgatgcaggttcacgacgaactggtgttcgaactgccagagggc
gacgtgacccgggcgaccgaggtcatccgccacgtgatggcgaccgccgcagaacccgcc
gtcacgctttccgtacccctgggtgtcgacgtcggcaccggcaagagctggggcgccgcg
cattga

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