Sphingomonas donggukensis: M9980_03620
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Entry
M9980_03620 CDS
T08944
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sdon
Sphingomonas donggukensis
Pathway
sdon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M9980_03620 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdon03400
]
M9980_03620 (mfd)
Enzymes [BR:
sdon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M9980_03620 (mfd)
DNA repair and recombination proteins [BR:
sdon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M9980_03620 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
URW76321
LinkDB
All DBs
Position
complement(731034..734489)
Genome browser
AA seq
1151 aa
AA seq
DB search
MPDLKTILSETKPLTLSGVATGFQPVLLADIARAAPGGALFIAPDEAAMRSIQATAPFFA
PELEVVAYPAWDCLPYDRASPTLRVMAERLAALHRLQQPTKAPRLLVTTANAAAQRTLTP
FRIRNLVATLAPGERISRDKLSALLQANGYVRTESVADAGEFAVRGGLVDLFPSGAEAGL
RLDFFGDEIETVRTFDPGDQRTTGSVKGFTLLPASEALLDEESIKRFRARYRETFGATAT
GDPLYQAVSEGRRLAGMEHWLPLFEERLETLFDHLPADMVVVRDTAVAAAAEARFEAVTD
YHANRMRAAGSEPGSYRPLPANALYLTAGEWAQHLADAPAHVATPFHEPESATVLDFGVD
GPRDFGPERSGGANVYEAVVDHLKRVKKDGRKAILASYSAGSRDRLKGLLEDHGLTGLRE
AETWQQALAQGDGGVALAVLPLDHGFTAPDVAVLTEQDMLGDRLVRRAKRRKSADAFLAE
LATLSPGDLVVHVDHGIGRYEGLTQVPVQRAPHDCVALSYAGGDKLYVPVENLEVLTRYG
AGEEGATLDRLGGEAWQRRKAKMKERIREIAGDLIATAAARALRPADIAEPDDSGFASFV
DRFPYEETEDQARAIEEVLADLSAGKPMDRLVVGDVGFGKTEVALRAAFVAAMAGLQVAI
VCPTTLLARQHFNNFAARFEGFPIRVGRLSRLVPAAEAKATKEGIADGQVDVVIGTHALL
AKGIGFKRLGLVVVDEEQRFGVTHKERLKALKSDVHVLTLTATPIPRTLQMAMSGLRELS
VIQTPPVDRLAVRTYVMPWDPVVVREALLREHYRGGQSFFVTPRVADLPDVEEFLREQVP
EVRYVVAHGQMAPTEVEERMSAFYDKKFEVLVSTTIIESGIDIASANTMIINRADRFGLA
QLYQLRGRVGRSKTRAYAYLTTPPERMMTAAADKRLKVLSDLESLGAGFQLASHDLDIRG
AGNMLGDEQSGHIKEVGYELYQSMLEEAILEARAGGKLERATGFSPQITVDAPILIPEDY
VPDLDLRMGLYRRLNDIDDKGGLEAFAAEMIDRFGKLPQPTDNLLKLMEIKLNAKSACIA
KLDVGPKGALVAFHENNFPNIDGLLAYVGKLGEVAKLRPDHKLVINRAWADPLARLHGAL
QLSRGLAKAAG
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctcaagaccatcctctccgagacgaaacctctcacgctctccggcgtcgcg
accgggttccagccagtcctgctcgccgacatcgcgcgcgctgcccccggtggcgccctc
ttcatcgcgcccgacgaagccgccatgcgcagcatccaggcgaccgcaccgttctttgcg
cccgaactggaggtcgtcgcttaccccgcgtgggactgcctgccctacgaccgcgcctcg
ccgacgctgcgtgtaatggccgagcggctggccgcgctccaccggttgcagcagccgacg
aaagcgccgcgcctgctcgtcaccaccgccaacgccgccgcgcagcgcacgctgacgccg
tttcgcatccgcaacctcgtcgcgacgctggcgccgggcgagcgtatctcgcgcgacaag
ctctccgcgcttctccaggccaacggctatgtccgcaccgaaagcgtcgccgatgccggc
gaattcgcggtgcgcggcggcctggtcgacctgttcccctcgggcgcggaagccgggctg
cggctcgacttcttcggcgacgaaatcgagacggttcgcactttcgaccccggcgaccag
cgcacgaccggcagcgtcaagggcttcaccctgctccccgcctcggaagccctgctcgac
gaggagagcatcaagcggttccgcgcacgctatcgcgagacgttcggcgcgaccgcgacc
ggcgaccccctgtaccaggcggtcagcgagggccggcggctcgcgggcatggagcattgg
ctgccgctgttcgaggagcggctggaaacgctgttcgatcacctgcccgccgacatggtc
gtcgtccgcgacactgcggtcgcggcggcggcggaggcgcggttcgaggcggtgacagat
taccacgccaaccgcatgcgcgcagccgggtccgagccgggcagctaccgcccccttccc
gccaacgcgctgtacctgaccgccggcgaatgggcgcagcacctcgccgacgcccctgcc
catgtcgcgacgccgttccacgagcccgagagcgcgaccgtgctcgacttcggcgtcgac
ggcccgcgcgatttcggtcccgagcgcagcggcggcgccaatgtatacgaggccgtcgtc
gatcacctgaagcgggtgaagaaggatgggcgcaaggcgatcctggccagctattcggcg
ggctcgcgcgatcggttgaagggcctgctcgaggatcacggcctgaccggcctgcgtgaa
gcggaaacatggcaacaggcgctcgcgcagggcgatggcggcgtcgcgcttgccgtgctg
ccgctcgaccacggtttcactgcgccggacgtcgcggtgctgaccgaacaggacatgctg
ggcgaccggctggtgcgccgtgccaagcgccgcaagtctgccgacgccttcctcgccgaa
ctcgccacgctgtcgccgggcgatctggtcgtgcacgtcgaccacggcatcggccgttac
gaggggctgacccaggtgccggtgcagcgcgcccctcacgactgcgtcgcgctgagctat
gccggcggcgacaaactctacgtgccggtcgaaaatctcgaagtcctgacccgctatggc
gcgggcgaggaaggcgctacgctcgatcgtctcggtggcgaggcatggcagcgccgcaag
gcgaagatgaaggagcgcatccgcgaaatcgcgggcgacttgatcgccaccgccgccgcc
cgcgcgctgcgccccgccgatatcgccgaacccgacgattcgggattcgccagcttcgtc
gatcgcttcccgtacgaagagaccgaggatcaggcccgcgcgatcgaggaagtgctggcc
gacctgtccgccggcaagccgatggaccggctggtcgtcggcgacgtcggcttcggcaag
accgaggtggcgctgcgtgccgcgttcgtcgcggcgatggcggggttgcaggtcgcgatc
gtatgcccgaccacgctgctcgcgcgccagcatttcaacaacttcgccgcccgtttcgaa
ggcttcccgatccgcgtcgggcgcctgtcccgcctggtccccgccgccgaggcgaaggcg
acgaaggaaggcatcgccgacgggcaggtcgatgtcgtcatcggcacccacgcgctgctg
gccaagggcatcggcttcaagcggctggggctcgtcgttgtcgacgaggaacagcggttc
ggcgtgacccacaaggaacggctgaaggcgctgaaatccgacgtccacgtcctgacgctg
accgcgacgccgatcccgcgcacgctccagatggcgatgtcgggcctgcgcgagttgtcg
gtcatccagacgcctccggtcgatcgcctggcggtgcgcacctacgtcatgccgtgggat
ccggtggtggtgcgcgaggcactgttgcgcgaacattatcgcggcgggcagagcttcttc
gtcaccccgcgcgtcgccgacctgcccgacgtcgaggaattcctgcgcgaacaggtgccc
gaagtccgctacgtcgtcgcccacggccagatggcgccgaccgaggttgaggagcgcatg
tccgccttctacgacaagaagttcgaggtgctggtgtcgaccaccatcatcgaaagcggc
atcgatatcgcgtccgccaacacgatgatcatcaaccgcgccgaccgcttcggccttgcc
cagctctaccagctgcgcgggcgcgtcgggcggtcgaagacgcgcgcctatgcctatctg
acgaccccgcccgagcggatgatgaccgcggcggcggacaagcggctgaaggtgctgtcc
gacctcgagtcgcttggtgccgggttccagctcgccagccacgacctcgacatccgcggg
gccggcaacatgctgggcgacgaacagtcgggacacatcaaggaagtcggctacgaactc
taccagtcgatgctggaggaggcgatcctggaggcgcgcgccggcggcaagctggagcgg
gcgaccgggttcagcccgcagatcaccgtcgatgcgccgatcctgatcccggaggactat
gtccccgacctcgacctacgcatggggctctatcgccgcctgaacgacatcgacgacaag
ggcggactggaggctttcgccgccgagatgatcgaccgcttcggcaaacttccgcagccg
accgacaatctgctgaagctcatggaaatcaagctgaacgccaagtcggcgtgcatcgcc
aagctcgacgtcgggccgaagggcgcgctggtcgcgtttcacgagaacaacttcccgaat
atcgatggcctgctcgcctatgtcggcaagctgggcgaggtcgcgaagctgcgccccgac
cacaagctggtcatcaaccgcgcctgggccgatccgctcgcgcggctgcatggcgcgctg
caactgtcgcgggggctggcgaaggccgcgggctga
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