Sphingomonas donggukensis: M9980_04330
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Entry
M9980_04330 CDS
T08944
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sdon
Sphingomonas donggukensis
Pathway
sdon03030
DNA replication
sdon03430
Mismatch repair
sdon03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M9980_04330 (dnaE)
03430 Mismatch repair
M9980_04330 (dnaE)
03440 Homologous recombination
M9980_04330 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdon03032
]
M9980_04330 (dnaE)
03400 DNA repair and recombination proteins [BR:
sdon03400
]
M9980_04330 (dnaE)
Enzymes [BR:
sdon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M9980_04330 (dnaE)
DNA replication proteins [BR:
sdon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M9980_04330 (dnaE)
DNA repair and recombination proteins [BR:
sdon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M9980_04330 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HHH_3
Motif
Other DBs
NCBI-ProteinID:
URW76453
UniProt:
A0ABY4U1N0
LinkDB
All DBs
Position
891951..895424
Genome browser
AA seq
1157 aa
AA seq
DB search
MSHSAFVPLRVFSSYTMLEGAIDPKAIAKRAKELGFPAVALTDRNGLYAAMAFGDACKDA
GVQPVIGTLLAVKRPVPDGVSAPIDWLALYAQDTTGYDNLCALVSMAHLGRPPEEDAHVT
LETLAGHTDGLLALTAGGEGALARLLADDQVEAAAAYADRLQALFPERLYVEITRRLDAI
EGRAEAKLIDLAYARDLPLIATNPCCFSEGGFHEAHDAMLCIANSTYVTSDDRPRSSPDA
WMKPATEMRRLFEDLPEALTNTLVVAQRCAVAAPKRKPILPSLAGDIAGEAAMLRDQARV
GLAARLDKAGIADDAAIETYRTRLEFELDVIIQMGFPGYFLIVADFITWAKDHDIPVGPG
RGSGAGSAVAWALKITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQER
YGSDKVAQIITFGTMKARAVLKDTGRVLQMGYGQINRLAGLIPNHPTDPWTLTRALNGVS
ELAAEYKNHSDVRHLLDLAMKLEGLPRHSSTHAAGVVIGDRPLAELVPLYRDPRSDMPVT
QFDMKYVEYAGLVKFDFLGLKTLSVLKKAVDMLAARGIDIDLDTLRWDDPAVYELLQRGD
TVGVFQLESEGMRRTLSAVRPSNFGDIIALVSLYRPGPMDNIPSFGARKNGREDIVYPHA
LLEPILAETYGIFVYQEQVMQAAQVLAGYSLGGADMLRRAMGKKIKAEMDAQRAGFVEGC
ASVNGIGAVQANSLFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHFPHEFFAASMCFD
IHQTDKLAIFVDDMKRLGVQCLPPDMNASEAEFSVETAGDDFAVRYGLGALKGVGERAME
QVVAEREANGGFTSLDDMARRIDPRVVNKRQVETLAAAGAFDSIDHNRAGVFAAAETLLA
VAARTQESRVSGQGGLFGEAEPGRTAIQLPKTARWSLMQRIEAEKEAFGFFFSGHPLDRY
AHLARGQGARSIATLPEVPVAEGARSGAMVAALVEDARWRTSARGKRYMMMTLSDQSGQV
QATCFDDDVAALLEEASKEGGCGLLTVELDRRSGEDTARVTVRRIVPLEGLATTTRMMLT
ASIDDSASVAALATLLHKHRGGRGEVRIRAAFDGGEAEVLLGRDFRLDSELAVAIENLHG
IRDCALKAQEERLALAG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgcactccgctttcgtcccgcttcgtgtcttctcgtcctacaccatgctggagggc
gcgatcgatccgaaggcgatcgcgaagcgcgcgaaggaactcggatttcccgcggtcgcg
ctgaccgatcgcaacgggctctacgcagcgatggcgttcggcgatgcgtgcaaggacgcg
ggcgtgcaaccggtgatcggcacgctgctggcggtcaagcgcccggtgccggatggcgta
tccgcgccgatcgactggttggcgctctatgcgcaggacaccaccggctacgacaatctc
tgcgcgctggtgtcgatggcgcatctcgggcgaccgcctgaggaggacgcgcacgtcacg
ctggagacgctcgccggccacaccgatggcctgctcgcgctgaccgcgggcggggagggg
gcgctcgctcgcctgctcgccgacgatcaggtcgaggcggcggcggcctatgccgaccgg
ttgcaggcgttgttccccgagcggctctacgtcgagattacccgccgcctcgacgccatc
gagggccgggccgaggcgaagctgatcgacctcgcctacgctcgcgatctgccgctgatc
gcgaccaacccgtgctgcttctccgaaggcggttttcacgaagcgcacgacgcgatgctt
tgcatcgccaattcgacctacgtcaccagcgacgaccgcccgcgcagctcgcccgacgca
tggatgaagccggcgaccgagatgcgccgcctgttcgaggatctgcccgaagcgctgacc
aataccctggtcgtcgcccagcgctgcgcggttgcggcgcccaagcgcaagccgatcctg
ccgagcctggccggcgatatcgcgggcgaagccgcgatgctgcgcgaccaagcgcgcgtc
ggtctcgccgcacggctcgacaaggcgggcatcgccgacgacgccgcgatcgagacctac
cgcacccgcctggaattcgagctcgacgttatcatccagatgggctttccgggctatttc
ctgatcgtcgccgacttcatcacctgggccaaggatcatgacatcccggtcggtccgggg
cgcggatcgggcgcgggctctgcggtcgcctgggcgctcaagatcaccgatctcgacccg
ctcaagctggggttgctgttcgaacgcttcctcaaccccgaacgcgtgtcgatgcccgat
ttcgacatcgatttctgcgaaacccgccgcggcgaagtcatccgctacgtccaggaacgc
tacggcagcgacaaggtcgcgcagatcatcaccttcggcacgatgaaggcgcgcgcggtg
ctgaaggataccgggcgcgtgctccagatgggctacggccagatcaaccgcctcgccggg
ctgatccccaaccacccgaccgatccgtggacgctgacccgcgcgctgaacggcgtgtcg
gagctggccgccgagtacaagaaccacagcgacgtccgccacctgctcgacctggcgatg
aagctggaggggttgccccgccattcctcgacccacgcggcgggcgtcgtgatcggcgac
cgaccgctcgccgaactggtgccgctgtatcgcgatccgcgatcggacatgccggtcacc
cagttcgacatgaaatatgtcgagtacgcgggcctggtgaagttcgacttcctcggcctc
aagacgctgagcgttttgaagaaggcggtcgacatgctcgccgcgcggggcatcgacatc
gatctcgatacgctgcgctgggacgatccggcggtgtacgaactgctccagcgcggcgat
acggtcggcgtgttccagctggaatcggagggcatgcgccgcaccctgagtgccgtccgt
ccgtcgaatttcggcgacatcatcgcgctcgtttcgctctaccggcccgggccgatggac
aacattccgagcttcggcgcgcgcaagaacggacgcgaggatatcgtctatccgcacgcg
ctgctggagccgatcctggccgaaacctacggcatcttcgtttaccaggaacaggtgatg
caggccgcgcaggtgctggccggctactcacttggcggagccgacatgctgcggcgcgcg
atgggcaagaagatcaaggcggagatggacgcccagcgcgccggcttcgtcgagggttgc
gcgagcgtcaacggcatcggcgcggtgcaggcgaacagcctgttcgatttgatcgacaag
tttgccggctacggcttcaacaaatcgcacgccgccgcctatgcgctgctcgcctaccag
accgcctggctgaaggcgcatttcccgcacgagttcttcgccgcctcgatgtgcttcgac
atccaccagaccgacaagctcgcgatctttgtcgacgacatgaaacggctgggcgtccag
tgcctgccgcccgacatgaacgccagtgaagccgaattctcggtcgaaaccgccggcgac
gatttcgccgtccgctacggtctcggcgcgctgaagggcgtcggcgaacgcgcgatggag
caggtcgtcgccgagcgtgaggcgaacggcggctttacgtcactcgacgacatggcacgc
cgcatcgacccgcgcgttgtgaacaagcgccaggtcgagacgctggccgccgccggcgcg
ttcgattcgatcgaccacaaccgcgccggggtcttcgccgccgccgaaaccctgctcgcg
gtcgccgcgcgcacccaggaaagccgcgtaagcgggcagggcggccttttcggagaggcc
gagcccggtcgcaccgctatccagttgccgaagaccgcgcgctggtcgctgatgcagcgg
atcgaggcggagaaggaggcgttcgggttcttcttctccggccacccgctcgatcgctac
gcgcatcttgcccgcggccagggcgcacgctcgatcgcaactctgcccgaagtgccggtg
gccgagggagcacgatcgggcgcgatggtcgccgcgctggtcgaggatgcgcgctggcgc
acctccgcgcgcggcaagcggtacatgatgatgacgctgagcgatcagtcgggtcaggtc
caggcgacctgcttcgacgacgacgtcgcggcgctgctggaggaggcgtcgaaggaaggc
ggctgcgggctgttgacggtcgagctcgatcgccgttccggcgaggataccgcgcgcgta
accgttcgccgaatcgtgccgctcgaaggactggcgacgacgacccgcatgatgctgacc
gcctctatcgacgattccgcgagcgtcgcggcgctggcaacgcttcttcacaaacaccgc
ggcgggcgcggggaggtgcggattcgcgccgcgttcgacggcggcgaggccgaggttttg
ctcggccgcgacttccgcctcgactccgagcttgccgtcgccatcgagaatttgcacggt
atccgcgattgcgcgctcaaggcccaggaagagaggctggcgctcgccggatag
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integrated database retrieval system
