Sphingomonas donggukensis: M9980_06165
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Entry
M9980_06165 CDS
T08944
Name
(GenBank) pyridoxal-dependent decarboxylase, exosortase A system-associated
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
sdon
Sphingomonas donggukensis
Pathway
sdon00300
Lysine biosynthesis
sdon00470
D-Amino acid metabolism
sdon01100
Metabolic pathways
sdon01110
Biosynthesis of secondary metabolites
sdon01120
Microbial metabolism in diverse environments
sdon01230
Biosynthesis of amino acids
Module
sdon_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
sdon00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
M9980_06165
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
M9980_06165
Enzymes [BR:
sdon01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
M9980_06165
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Paralog
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GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
URW76779
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All DBs
Position
complement(1261596..1262795)
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AA seq
399 aa
AA seq
DB search
MKPIGPIPPEFAAPGALTIAGRSAEDWVAAHGSPVFVYDPAIVATRIATLRAAMPAGLDI
HFAIKANPFPPLLAAIAPLVDGLDVASAGELAKAVAVKPASAISFAGPGKRDAELEAAIA
LGATINVESEGEATRALAIGDRLGIAPRLAVRVNPSFELKGSGMKMGGRPAPFGVDAARV
PALVRQIIASGADWCGFHIFAGSQALDTQAIIETQAATVALAAELAEQAGAQPPLVNIGG
GFGVPYFAGDTPVDVAAIGAALGRWLHPGTRYAIELGRWLVAECGVYLARIVDRKESGGE
IFLVLDGGLHHQLAASGNFGTVVRRNYPVALARDVGGAATETVSIVGPLCTPLDRLADRI
AFPRADVGDVVAVFLAGAYGLTASPHDFLGHPKPPEILA
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
gtgaagccgatcggcccgatcccgcccgaattcgccgcgccgggcgcgctgacgatcgcc
ggtcggagcgccgaggattgggtggccgcgcatggcagcccggtgttcgtgtacgatccc
gctatcgtcgcgacccgcatcgcgacgctgcgcgcggcgatgccggcggggctcgacatc
catttcgcgatcaaggccaatcccttcccgccgctgctggcggcgatcgcgccgctggtc
gacggcctcgatgtggcgtccgcaggcgaactcgcgaaggcggtggcggtaaagccagcg
tcggcgatcagcttcgccgggccgggcaagcgcgatgcggaactggaagcggcgatcgcg
ctgggcgcgacgatcaacgtcgagtcggaaggcgaggcgacgcgtgcgctcgccatcggc
gaccggctgggcatcgcgccgcggttggcggtgcgggtcaatccaagcttcgagctgaag
ggcagcggcatgaagatgggcgggcgtccggcgccgttcggcgtcgatgctgcgcgcgtc
ccggcgctggtacgccagatcatcgcgagcggcgccgactggtgcggctttcacatcttt
gccgggtcgcaggcgctggatacgcaggcgatcatcgagacgcaggcggcgaccgtcgcg
ctggcggcggagcttgccgagcaggcgggcgcccagccgccgctggtcaacatcggcggc
ggcttcggcgtaccctatttcgcgggcgacacgcccgtcgacgtggccgcgatcggcgcg
gcgctcgggcgatggctgcaccccggcactcgctatgccatcgaactcgggcgctggctg
gtggccgaatgcggcgtctatctggcgcgcatcgtcgatcggaaggagagcgggggcgag
atattcctcgtcctcgacggcgggctgcaccaccagctcgccgccagcggcaatttcggc
accgtggtccgccgcaactatcccgtcgcgctcgcccgcgacgtcggcggcgcggccacc
gagacggtgtcgatcgtcggcccgctctgcaccccgctcgatcgcctggcggaccgcatt
gcctttccccgcgccgatgtcggcgatgtcgtcgcggtcttcctggcgggcgcctacggc
ctcaccgccagcccgcacgacttcctcggccacccgaagccgcccgaaatcctcgcctaa
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