Sphingomonas donggukensis: M9980_12680
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Entry
M9980_12680 CDS
T08944
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sdon
Sphingomonas donggukensis
Pathway
sdon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9980_12680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdon03019
]
M9980_12680
03009 Ribosome biogenesis [BR:
sdon03009
]
M9980_12680
Enzymes [BR:
sdon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M9980_12680
Messenger RNA biogenesis [BR:
sdon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M9980_12680
Ribosome biogenesis [BR:
sdon03009
]
Prokaryotic type
rRNA processing factors
M9980_12680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
URW75378
LinkDB
All DBs
Position
2583573..2586185
Genome browser
AA seq
870 aa
AA seq
DB search
MTMRMLIDARHREETRVAVVNGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFID
YGGNRHGFLAFSEIHPDYYQIPKEDRDALLREEAEHAAEEAALRAEHDGDEDHDDEHEGE
GDHASDDHDDDESHDEEVSTGEDSPRRKRRGGGHDDAAVEDLRERRMNLRRRYKIQDVIR
RRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTAHGGGISRKISNAGDRKRLKSI
MADLTLPPSMGCIVRTAGLQRTKTEIKRDFDYLARLWDGIREETLKSAAPALVYGDSDLM
KRAIRDIYNKEIDEVIVEGEAGYRQAKEFMKLLMPSHARRVKHYSDPVPLFQRAHVEDQL
AAMYHPVVQLKSGGYLVINPTEALVSIDINSGRSTREHSIEQTATATNLEAAQEIARQLR
LRDMAGLVVIDFIDMDHGSNVRKVEKAMKEALKDDRARIQVGRISSFGLMEMSRQRLRTG
VLEASTRQCPHCEGTGLVRTASSAGLSALRLIEDEAARGRGSQITLRASQEAAFYLLNNK
RAELAEIEDRYGVRVEVLSDGEVEGARMSVEASGPPPAHAPRFDAPMQDFDDDLPEDEDE
EEVEEETEAEDEPRERRPRREREEGEEGSGRGRGRRRRRGRRGRGRDEDQAAPSNDDASG
EPVEGDAAEDEPVDTGDAPTAPRTDEGGEPRRRRRRGRRGGRREGGGEVIADAEAPVEDV
SEPDVEVVEAEPEAEAPKPRRSRRRKPVADEAPAPVAEVEAPAEDAPVEKPKRSRRKAAA
PVEAVEAAPVAEAAPEADAAEDAPKPRRRTSRKKADPVAPIADDVATTEAVAVDGAADGA
APVDDAAGPDGGDDADGTPRRGWWQRTFGA
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgcgtatgctgatcgacgcacgccaccgggaagaaacccgcgtcgccgtcgtc
aacggaaatcgaatcgaggaatttgacttcgagtccgccgagcgcaagcagctcaagggc
aacatctatctggccaaggtgacgcgcgtggagccgtcgctccaggccgcgttcatcgat
tacggcggcaatcgccacggcttcctggcgttcagcgaaatccaccccgattactaccag
atccccaaggaggatcgcgacgcgctgctgcgcgaggaggccgagcacgccgccgaggag
gccgcgctgcgcgccgagcatgacggcgacgaggatcacgacgacgagcatgagggcgag
ggcgatcatgcgtccgacgaccatgacgacgacgagtcgcacgacgaggaagtgagcacc
ggcgaggattcgccgcggcgcaagcggcgcggcggcgggcatgacgatgctgcggtcgag
gatttgcgcgagcgccgcatgaacctgcgccgccgctacaagatccaggacgtgatccgc
cgccgccaggtgctgctggtccaggtcgtgaaggaagagcgcggcaacaagggtgcggcg
ctgacgacgtacctgtcgctcgccgggcgctactgcgtgctgatgcccaacaccgcgcat
ggcggcgggatttcgcgcaagatcagcaacgcgggcgaccgcaagcggctgaagtcgatc
atggccgacctgacgctgccgccgtcgatgggctgcatcgtccgcaccgccgggcttcag
cgcaccaagaccgagatcaagcgcgacttcgactatctcgcgcgtctgtgggacggcatc
cgcgaggaaacgctgaagtcggcggcccccgcgctcgtctatggcgacagcgacctgatg
aagcgcgcgatccgcgacatctacaacaaggaaatcgacgaggtcatcgtcgagggcgag
gccggataccgccaggccaaggagttcatgaagctcctgatgcccagccacgcgcgccgc
gtgaagcattacagcgaccccgtgccgctgttccagcgcgcgcatgtcgaggaccagctg
gcggcgatgtaccatccggtcgtccagctgaaatcgggcggctatctggtcatcaatccg
accgaggcgctggtgtcgatcgacatcaactcagggcgctcgacccgcgagcattcgatc
gagcagaccgcgaccgcgaccaatcttgaggctgcgcaggaaatcgcgcgccagctgcgc
ctgcgcgacatggcgggcctggtcgtcatcgacttcatcgacatggatcacggatcgaac
gtccgaaaggtcgagaaggcgatgaaggaggcgctgaaggacgatcgcgcccgcatccag
gtcggtcgcatctcgtcgttcggcctgatggaaatgagccgccagcgcctgcgcaccggc
gtgctggaggcatcgacccgccagtgcccgcattgcgagggcaccggcctggttcgcacc
gcatcgtcggcgggcttgagcgcgctgcgcctgatcgaggacgaggccgcccgcggtcgc
ggctcgcagatcacgctgcgcgccagccaggaagcggccttctacctgctcaacaacaag
cgcgccgaactggcagagatcgaggaccgctacggcgtccgcgtcgaggtgttgtccgat
ggcgaggtcgagggcgcgcgcatgtcggtcgaggcgtcgggcccgccgcccgcgcacgcc
ccgcgcttcgacgcgccgatgcaggacttcgacgacgacctgcccgaggacgaggacgag
gaagaggtcgaggaggagaccgaggccgaggacgaaccgcgcgagcgccgtccccgccgc
gagcgcgaagagggcgaggaaggcagcggtcgtggccgcggtcgccgccgtcgtcgtggc
cgtcgtggtcgtgggcgtgacgaggatcaggcggcgccgtcgaacgacgatgcgtccggc
gaaccggtcgagggtgatgccgccgaggacgagccggtcgataccggcgacgcgccgacc
gctccgcgcaccgacgagggcggcgaaccgcgccgccgtcgccgtcgtggccgtcgtggc
ggccgccgcgagggtgggggcgaggtgatcgccgacgccgaggcacctgtcgaggacgtt
tccgaaccggacgtcgaagtggtcgaggccgagcccgaagccgaagcgcccaagccgcgc
cgctcgcgccgccgcaagccggtggcggacgaggctccggctccggtcgccgaggtcgag
gcacccgccgaggacgcgcccgtcgagaagcccaagcgttcgcgccgcaaggccgcggcg
ccggtcgaagctgtcgaggccgcgccggtcgccgaggctgcgcccgaggccgacgccgcc
gaggacgcacccaagccgcgtcgtcggaccagccgcaagaaggccgatccggtcgccccg
atcgccgacgacgtcgcgaccaccgaggcggtcgcggtggacggtgccgccgacggcgcc
gcgccggtcgacgacgctgccggcccggacggcggggacgatgccgacggcaccccgcgc
cgcggctggtggcagcgcacgttcggcgcatga
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