Staphylococcus delphini: NCTC12225_00815
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Entry
NCTC12225_00815 CDS
T06587
Name
(GenBank) DEAD-box ATP dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sdp
Staphylococcus delphini
Pathway
sdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12225_00815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdp03019
]
NCTC12225_00815
03009 Ribosome biogenesis [BR:
sdp03009
]
NCTC12225_00815
Enzymes [BR:
sdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12225_00815
Messenger RNA biogenesis [BR:
sdp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12225_00815
Ribosome biogenesis [BR:
sdp03009
]
Prokaryotic type
rRNA helicases
NCTC12225_00815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
SUa-2TM
CMS1
AAA_30
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
VED62246
LinkDB
All DBs
Position
1:873395..874882
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AA seq
495 aa
AA seq
DB search
MQKFTELGVSERTAETLEAMGFTEPTPIQKDSIPFALENIDILGQAQTGTGKTGAFGIPL
IEKVVGQEGVRALILAPTRELAMQVAEQLREFSRGQKVQVVTVFGGMPIDRQIKSLKRGP
QIVVGTPGRVIDHLNRRTLKPQQIETLILDEADEMMNMGFIDDMRYIMDKLPSENRQTML
FSATMPKAIQELVQKFMKSPRIIKTMNNEISDPQIDEYYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKHGIAVTFVNPIEMDYIRQIEQTNR
RQMRALRPPHRKEVLKAREDEIKSKVQSWMDAAKEPRVENIAKQLLETYDQTELVTALLQ
ELVESNDEVDVQLTFEKPLARKNGRSPKGNRKGGNNKRHSKAGRNHKPSGNKKGNFKHKR
ETKVKKGRTFADHQK
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaaatttacagaattaggcgtttcagaacgtacagctgaaaccctcgaggcaatg
ggatttacggagccgacacccattcaaaaagatagtatcccattcgcactcgaaaacatt
gatatcctaggtcaagcgcagaccggaacaggaaaaacaggtgcctttggtatcccattg
atcgaaaaagttgttgggcaagaaggcgtgcgtgctttaattttagcacctacacgtgaa
ttagcgatgcaagtagctgaacaattacgtgaattcagccgtggtcaaaaagtccaagtc
gtgactgtatttggtggtatgccaatcgaccgtcaaattaaatcattaaaacgcggacca
caaatcgtagtgggtacaccaggtcgtgtgattgaccaccttaatcgccgtacattaaaa
ccacaacaaatcgaaacgttaattttagatgaagcggacgaaatgatgaacatgggcttc
attgacgatatgcgttatattatggataaattgccatcagaaaaccgtcaaacgatgtta
ttctcggcaacaatgccaaaagcgattcaagaattagtacaaaaatttatgaaatcgcca
cgtatcattaaaacaatgaataatgaaatttctgacccacaaattgacgaatattacact
atcgttaaagaacttgaaaaattcgatacatttacgaatttcttagatgtacatcaacct
gagttagcgattgtgttcggtcgtacaaaacgccgtgtcgatgagttaacaagtgcttta
ctttcaaaaggctacaaagctgaaggtttacacggtgatattacacaggcgaaacgtttg
gaagtattgaaaaagtttaaaaacgaccaaattgatattttagttgcgacagacgttgcg
gctagaggattagacatttcaggtgtgagtcacgtttataactttgacattccacaagat
acagaaagttatacacaccgtattggacgtacaggtcgtgcgggtaaacatggtatcgcc
gtgacgtttgtcaacccaattgaaatggattatatccgtcaaatcgagcaaacaaaccgt
cgtcaaatgcgtgcgttaagaccgccacatcgtaaagaagttttaaaagcacgtgaagat
gaaattaagagcaaagttcaaagttggatggacgctgcgaaagaaccacgtgtcgaaaac
atcgcgaaacaacttcttgaaacgtatgatcaaacagaacttgtgactgcgttattacaa
gaattagtggaatctaatgatgaagtcgatgtacaattaacatttgaaaaaccattggca
cgtaaaaatggtcgttcaccaaaaggcaatcgtaaaggtggcaacaacaaacgtcattca
aaagcaggacgtaaccataagccaagtggtaataaaaagggcaatttcaaacataaaaga
gaaacaaaagtgaaaaaaggacgtacatttgcggatcatcaaaaataa
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