KEGG   Staphylococcus delphini: NCTC12225_01229
Entry
NCTC12225_01229   CDS       T06587                                 
Symbol
ribD
Name
(GenBank) riboflavin specific deaminase
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
sdp  Staphylococcus delphini
Pathway
sdp00740  Riboflavin metabolism
sdp01100  Metabolic pathways
sdp01110  Biosynthesis of secondary metabolites
sdp01240  Biosynthesis of cofactors
sdp02024  Quorum sensing
Module
sdp_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:sdp00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    NCTC12225_01229 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    NCTC12225_01229 (ribD)
Enzymes [BR:sdp01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     NCTC12225_01229 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     NCTC12225_01229 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam APOBEC3 APOBEC_N
Other DBs
NCBI-ProteinID: VED62613
LinkDB
Position
1:1231692..1232738
AA seq 348 aa
MNHYLESAIQLAEMTQGQTGTNPAVGAVIVKHGRIIGFGAHLKKGERHAEIQAIDMAGAE
HVKGATIYVSLEPCSHYGSTPPCAQRIIDTGISKVVYAAKDTTLQETGHDMMVQHGIKVE
YRPHPRAEQLYAAFYDSKEDAVPIVTVKVSASLDGKQATDHFESQWITSKQVKADVFQLR
HSHDAIITGNGTLTHDNPSLTTRMEDGHHPAKVILSRSGQINWNAQLFQDCVTPIYIYTE
NQALTSSLDHVEIIQQTDMQIEDVLKDLYQKGYGHVLVEAGPNVTSQFLASRFVTHFILY
LAPKIIGGQGVNQFYQTALVTPLNQLPQFEIVQTDIIDTDLKLRMQRK
NT seq 1047 nt   +upstreamnt  +downstreamnt
atgaaccattatttagaatctgcgatacaattggcagaaatgacgcaaggccaaactgga
acgaatccagcagtgggcgccgtcattgtgaaacatggacgtatcatcggtttcggtgca
catttaaaaaagggtgagcgccatgctgaaattcaagcgattgatatggcaggcgctgaa
catgtcaaaggtgcaacgatttacgtctcacttgaaccatgttcacattacggtagtacg
cctccatgtgcacaacgtatcattgacactggcatttcgaaagtcgtttatgctgcgaaa
gatacgacgttacaagaaacaggccatgacatgatggtgcaacatggtattaaggtggaa
tatcgtccgcatccacgtgccgaacaattgtatgccgctttttatgacagtaaagaagat
gccgtgcccattgtgacagttaaggtgagcgccagtttagatggcaaacaagcgacggat
cattttgaaagtcaatggattacttctaaacaagtaaaggcagatgttttccaactgaga
cattcacatgatgcgataataactggcaatggcacgctgacacatgataatccaagttta
acgacacgcatggaagacggccatcatccagcgaaagtcattttatcgcgttcaggtcaa
atcaactggaatgcacaacttttccaagattgcgtgacaccgatttatatttatacagaa
aatcaagcacttacttcatcattggaccatgttgaaattattcagcaaaccgacatgcaa
attgaagatgtgctcaaagatttatatcaaaaaggttatggccatgtccttgtcgaagca
ggccctaacgtcacttcacaatttttagcgtctcgttttgtgacgcacttcatcctatat
ttagccccgaaaatcataggtggtcaaggtgtgaatcaattttatcaaacagcattggta
acacctttaaaccaacttccacaatttgaaattgtacaaactgacataatagataccgat
ttaaaactccgaatgcaaaggaagtga

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