Staphylococcus delphini: NCTC12225_01389
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Entry
NCTC12225_01389 CDS
T06587
Symbol
trmU
Name
(GenBank) tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
KO
K00566
tRNA-uridine 2-sulfurtransferase [EC:
2.8.1.13
]
Organism
sdp
Staphylococcus delphini
Pathway
sdp04122
Sulfur relay system
Brite
KEGG Orthology (KO) [BR:
sdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
NCTC12225_01389 (trmU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdp03016
]
NCTC12225_01389 (trmU)
Enzymes [BR:
sdp01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.13 tRNA-uridine 2-sulfurtransferase
NCTC12225_01389 (trmU)
Transfer RNA biogenesis [BR:
sdp03016
]
Prokaryotic type
tRNA modification factors
Thiolation factors
NCTC12225_01389 (trmU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_Me_trans
tRNA_Me_trans_C
tRNA_Me_trans_M
NAD_synthase
ATP_bind_3
Arginosuc_synth
QueC
ThiI
DUF7411
CD1107-like
PAPS_reduct
Asn_synthase
Motif
Other DBs
NCBI-ProteinID:
VED62764
LinkDB
All DBs
Position
1:1397901..1399013
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AA seq
370 aa
AA seq
DB search
MTNQNTRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDDTDEFGVCTATEDYNDVIA
VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHALKLGA
DYVATGHYARVRHHEDGSVEMLRGVDNNKDQTYFLNQLTEAQLSKVMFPIGDIDKQKVRE
IALEQDLATAKKKDSTGICFIGERNFKTFLSQYLPAQPGEMRTLNGELKGQHGGLMYYTI
GQRHGLGIGGDGDPWFVVGKNLEDNILYVEQGFHHDALYSDYLIASDVSFVNATDLTEPL
KCTAKFRYRQKDVGVTVTAHGDDAVKVTFDEPVRAITPGQAVVFYDGDVCLGGATIDDVY
KKDGQLDYVV
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaaccaaaacacacgtgtcgtagtcggcatgtcaggtggtgtagacagttcagta
actgcccatctattgaaagaacaaggctacgatgtgatcggtatatttatgaaaaactgg
gatgatacggatgagtttggcgtatgtacagcgacagaagattacaatgatgtgattgcg
gtatgtaaccaaatcggcatcccttactatgcagtcaattttgagaaagagtattgggat
aaagtgtttacgtactttttagatgaatataaaaaaggacgtacaccgaatccagatgtc
atgtgtaataaagaaattaaattcaaagcctttttagaccatgcattaaaacttggtgcg
gattatgtagcgactggccattatgcgcgtgtacgtcatcacgaagatggttcagtagaa
atgttacgtggcgtcgataacaataaagatcaaacgtatttcttgaatcagttgactgaa
gcacaattaagtaaagtgatgtttccaattggtgatatcgataagcaaaaagtccgtgaa
attgcgttagaacaagatttagccacagcgaagaaaaaagattcaacagggatttgtttt
attggtgagcgtaattttaaaacatttttatcgcaatatttacctgcgcaaccaggtgaa
atgcgtacacttaatggtgaattgaaaggtcaacatggcggtctcatgtattatacgatt
ggccaaagacatgggctcggtattggtggcgatggagatccttggttcgtcgtaggtaaa
aacttagaagacaacattttatacgttgaacaaggtttccatcacgatgcattatacagc
gactatttaatcgcttctgatgtgtcatttgtgaatgcaacagacttaactgagccgttg
aaatgtacggccaaatttagataccgtcaaaaagatgtcggcgttactgtgactgcacat
ggtgacgatgcagtaaaagtgacgttcgacgagccagttcgcgccattacacctggccaa
gctgtcgtattttacgatggcgatgtatgtttaggcggtgcaacaattgatgacgtctat
aaaaaagacggccaacttgattatgtcgtatag
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