Staphylococcus delphini: NCTC12225_01751
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Entry
NCTC12225_01751 CDS
T06587
Symbol
polC_2
Name
(GenBank) DNA polymerase III subunit alpha
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
sdp
Staphylococcus delphini
Pathway
sdp03030
DNA replication
sdp03430
Mismatch repair
sdp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12225_01751 (polC_2)
03430 Mismatch repair
NCTC12225_01751 (polC_2)
03440 Homologous recombination
NCTC12225_01751 (polC_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdp03032
]
NCTC12225_01751 (polC_2)
03400 DNA repair and recombination proteins [BR:
sdp03400
]
NCTC12225_01751 (polC_2)
Enzymes [BR:
sdp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC12225_01751 (polC_2)
DNA replication proteins [BR:
sdp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC12225_01751 (polC_2)
DNA repair and recombination proteins [BR:
sdp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC12225_01751 (polC_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NI
DNA_pol3_a_NII
HHH_6
HHH_3
tRNA_anti-codon
RNase_H_2
T2SSK
Motif
Other DBs
NCBI-ProteinID:
VED63117
LinkDB
All DBs
Position
1:complement(1778952..1783259)
Genome browser
AA seq
1435 aa
AA seq
DB search
MTLQNQEKFKILLKQMNMLDHFDQDFIDQGQLTRVDVSQKSRKWTFHIQLPRLLKYEDYA
VFTHAMKESFQHIADVDWKITVNDASQQDEYLLKYLGDCIEQTQLSPKVKGQLKQKRMIV
SGDVVKILVQNDIEGNHFNKVCNGSLVRAMQRCGFNVQKVVFETDESGHDEDLASLEAHI
QEEDEQSAREATAKIEKMKEQRAQQDDEVAVERCQIGKPIQVENVRPIESIIEEEFKVAI
EGVIFDINLKELKSGRHIVELKVTDYTDSLVLKMFTRKNKNDLDHFKSLKEGQWVRAQGR
IEEDMFIRDLVMMMSDIEAIKRTPKMDKATEKRVEFHLHTSMSQMDGVTHIGDYVAQAAQ
WGHDAIAVTDHNVVQAYPDAHAAAEKHGIKMIYGMEGMLVDDGVPIAYKPSDIMLQDATY
VVFDVETTGLSNQYDKIIELAAVKVKNGEIIDKFERFSNPHEKLTETIKNLTHITDDMLK
DAPEIEEVLTEFKAWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTNAVIDTLELSRTIN
TSYGKHGLNFLAKKYGVELTQHHRAIYDTEATAYIFVKMLAQLKALDVHNHQDINKKLSN
EDAYKRARPQHVTLIVQNQTGLKNLFKIVSASLVQYYYRTPRIPRSLLDEHREGLLVGTA
CDEGEVFTAVMQRDQSEVERIAKYYDYIEVQPPALYQDLLDRDLIRDNETLVEIYERILK
VGETNQIPVIATGNAHYLHEHDAIARRILIAAQPGNPLNRSTLPEAHFRTTDEMLDAFHF
LGEERAHQIVVENTRALADRIEKVVPIKDKLYTPNMDGANEEIREMSYRHAKQLYGEDLP
QIVIDRLEKELESIIGNGFAVIYLISQRLVKKSLEDGYLVGSRGSVGSSFVATMTEITEV
NPLPPHYICPSCKKSEFFDDGSVGSGFDLPDKTCECGTEMIKEGQDIPFETFLGFKGDKV
PDIDLNFSGEYQPKAHNYTKVLFGEEYVYRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGA
EVDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIFDFTPIQYPADDQSSSWMTTHFDFHSIH
DNVLKLDILGHDDPTMIRMLQDLSGIDPKTIPVDDQQTMGIFSSPEALGVTEEEILAKTG
TFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIRSGTCTLSSCIG
CRDDIMVYLMYAGLEPSLAFKIMEAVRKGKGLTEEFEQVMRENNVPDWYMDSCKKIKYMF
PKAHAAAYVLMAVRIAYFKVHHPLYYYASYFTVRASDFDLITMVKDKDSIRQTVKDMYAR
YMDLGKKEKDVLTVLEIMNEMAHRGYRMQPVNLEKSQAYEFIIEGDTLIPPFVAVPGLGE
NVAKRIVEAREDGPFLSKEDLNKKAGVSQKIIEYLDSLGSLPNMPDKAQLSIFDM
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
ttgacattacagaatcaagaaaaatttaagattcttctcaaacaaatgaatatgttagac
cattttgatcaggacttcattgatcaaggccaattgacacgtgtagatgtatcccaaaaa
tcacgaaagtggacgtttcatattcagttgccacgattattaaaatatgaagactatgca
gtttttacgcatgcgatgaaagaaagcttccaacatattgcagatgtagattggaaaatt
acggtcaatgatgcgtcacaacaagatgaatatttactgaagtatttaggtgattgtatt
gaacaaacgcaattgtcgcctaaagtaaaagggcaattaaaacaaaaacgtatgattgtc
tcaggtgatgtcgttaaaatacttgtccaaaacgatattgaagggaaccatttcaataaa
gtgtgcaacggcagcttagtgcgcgcaatgcaacgatgtggttttaatgtgcaaaaagtt
gtatttgaaacggatgaaagtggtcacgatgaagatttagcatcattagaagcacacatt
caagaggaagatgaacaaagtgcacgcgaagcaactgctaaaattgaaaaaatgaaagaa
caacgtgcacaacaagatgatgaagtggccgtcgaacgttgtcaaattggcaagccgatt
caagttgagaatgttcgaccgattgaatcgattattgaagaagagtttaaagtggcgatt
gaaggggtcattttcgacattaatttaaaagagttgaaaagtggccgtcacatcgtcgaa
ttaaaggtgacagactataccgattcactcgtccttaaaatgtttacgcgtaaaaataaa
aacgacttagaccatttcaaatcattaaaagaaggtcaatgggtgcgcgcacaaggtcgc
attgaagaagatatgttcattcgcgacctcgtgatgatgatgtctgacattgaagcgatt
aaacgtacacccaaaatggataaagctacggaaaaacgtgtggaattccatttgcataca
tcaatgagtcaaatggatggtgtgacgcatattggtgattatgtcgcacaagctgcacaa
tggggacacgatgcgattgcagtaacagatcataacgtcgtacaagcttatcccgatgcg
catgcggcagctgaaaagcatggcattaaaatgatttacgggatggaaggcatgctcgtt
gatgatggtgtgccgattgcgtacaaaccgtctgatataatgctccaagatgcgacatat
gtcgtgtttgacgtagagacgacgggattgtccaaccagtacgataaaattatcgagttg
gccgcagtgaaagtgaaaaatggcgaaatcattgataaatttgagcgttttagcaatccg
catgaaaaattgactgaaacgattaaaaacttgacgcatattacagacgatatgctaaaa
gatgcacctgaaatagaagaagtgctcactgaatttaaagcatgggtaggcgacgcgatt
ttcgttgcccataatgcctcgttcgacatgggctttatcgacaccggttacgaacgtctc
ggctttggtccttcgacaaatgcggtgattgatacacttgaattgtcacgtacgattaac
acaagttatggtaaacatggcttgaactttttagctaaaaaatatggcgtagagctcaca
caacatcaccgtgcgatttatgatacggaagcaacagcttatatttttgtgaagatgttg
gcacaattaaaagcgttagatgtgcacaaccatcaagacattaacaaaaaattatcgaat
gaagatgcttacaaacgcgcacgccctcaacacgtcacattaatcgtgcaaaatcaaaca
gggcttaaaaacttgtttaaaattgtcagcgcgtcactcgtgcaatattattaccgtaca
cctcgtatcccacgttcattactagatgagcatcgtgaaggcttgttagtcggtactgca
tgtgatgaaggtgaagtatttacagccgtcatgcaacgtgatcaatctgaagttgaacgg
attgcgaaatattatgattatattgaagtgcaaccgcctgcgttgtatcaagatttactg
gatcgtgacttgattcgtgacaatgaaacgcttgtcgaaatttatgagcgtattttaaaa
gtgggagaaacgaatcaaattcctgtaattgcgacaggaaatgcacactatttacatgaa
catgatgcaattgcacgtcgtattttaatcgccgctcaaccaggtaacccgttgaaccgt
tcgacgttaccagaagcacattttagaacgaccgatgaaatgttagatgctttccatttc
ttaggtgaggaacgtgcgcatcaaatcgtcgttgaaaatacacgtgcgttggcagatcgc
attgaaaaagttgttccaattaaagataaactgtatacgccaaatatggacggcgcaaat
gaagaaattcgtgaaatgagttatcgtcatgcgaaacagttgtacggtgaggacttgcca
cagattgttattgatcgattagagaaagaattagaaagtattattgggaacggatttgcg
gttatttatttaatttcgcaacgactcgttaaaaagtcattagaagatggttatttagta
ggttctcggggttcggtcggttcaagctttgttgcgacgatgacggaaattacagaagtg
aacccactgccaccgcattacatttgtccaagttgtaaaaagagcgagtttttcgatgat
ggttcggttggttcaggctttgacttgcctgataaaacgtgtgaatgtggcacagagatg
atcaaagaaggacaagatattccgttcgaaacgttcttaggcttcaaaggggataaagta
cccgatatcgacttgaactttagtggtgaatatcaaccgaaagcccataactacacgaaa
gttttgttcggtgaggaatatgtttatcgtgccggaacaattggtactgtcgctgaaaaa
acggcatttggtttcgtgaaagggtacttaaatgatcaaggcattcataagcgtggtgct
gaggtcgatcgtctcgtaaaaggttgtacaggtgttaaacgtacgactggtcagcaccca
ggtgggattatcgttgttccagattatatggacatttttgactttacgccaattcaatat
ccagcagacgatcaaagttcaagttggatgacgacgcactttgacttccattcgatccat
gataacgttctgaaactcgatattctcggacacgatgatcctacgatgattcggatgtta
caagacttgtcaggtatcgatccgaaaacgattcctgttgatgatcaacaaacgatgggg
attttcagttctccagaagcgctcggtgtgacagaagaggaaattttagcgaaaactgga
acgttcggtgtgccagaatttgggacaggcttcgtacgtcaaatgttagaagatacgaaa
ccgacgacattttcagagcttgtacaaatttcagggctttcacatggtaccgacgtatgg
ctaggtaatgcacaagaactgattcgtagtggaacttgtacgttgtcgagctgtatcggt
tgtcgtgacgatattatggtgtacttgatgtatgcgggtttagaaccgtcgctcgccttt
aaaattatggaagcagtacgtaaaggtaaaggcttaacagaggaatttgagcaagtgatg
agagaaaataacgtgccagactggtatatggattcatgtaagaaaattaaatacatgttc
ccgaaagcccatgctgcagcttacgtgttaatggctgttcgtatcgcttatttcaaagtg
catcatccactttattattatgcaagttattttactgtgcgtgcatcagattttgatttg
attacgatggtgaaagacaaagacagtatccgccaaactgtgaaagatatgtatgcgcga
tatatggatttaggtaaaaaagaaaaagacgtgttgactgtattagaaattatgaatgaa
atggcgcatcgtggttaccggatgcaacctgtcaacttagagaaaagtcaggcatatgag
ttcatcattgaaggagacacattaattccgccattcgttgctgtgccgggtcttggcgaa
aacgtagcgaaacgtattgttgaagcacgtgaagatggaccgttcttatcgaaagaagat
ttgaacaaaaaagcaggggtatcacaaaaaatcattgaatacctcgatagtttaggctca
ttaccgaatatgcctgacaaagcacagttgtccatctttgatatgtag
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integrated database retrieval system
