Staphylococcus delphini: NCTC12225_02448
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Entry
NCTC12225_02448 CDS
T06587
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sdp
Staphylococcus delphini
Pathway
sdp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC12225_02448 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdp03021
]
NCTC12225_02448 (rpoC)
03400 DNA repair and recombination proteins [BR:
sdp03400
]
NCTC12225_02448 (rpoC)
Enzymes [BR:
sdp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC12225_02448 (rpoC)
Transcription machinery [BR:
sdp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC12225_02448 (rpoC)
DNA repair and recombination proteins [BR:
sdp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC12225_02448 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
VED63798
LinkDB
All DBs
Position
1:complement(2519319..2522939)
Genome browser
AA seq
1206 aa
AA seq
DB search
MIDVNKFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMICDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFRDYYDKFPGQFTAKMGAEGIKDLLE
EINLDEELKMLRDELESATGQRLTRAIKRLEVVESFRNSGNNPAWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPNLKMYQCGLPKE
MALELFKPFVMKELVQREIATNIKNAKSKIERTEDEVWDVLEDVIIEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGMMFNDTNEVIKAYANGHVHLHTRIGVQ
ASSFNNPTFTEEQNRKILTTSVGKVIFNEIIPDSFAYINEPTATNLEKSTPDKYFVDASE
LGEGGLAEYFENTELVPPFNKKFLGNIIAEVFNRFSITDTSMMLDLMKDLGFKYSSKAGI
TVGVADIVVLPDKQEILDESEKLVERVQKQFNRGLLTEEERYNAVIEIWTNAKDRIQAKL
MKSLDKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI
EPFIERIEGRYSKETVRHPETDKIIIRPDELITPEIAKEITDAGIEEMYIRSAFTCNTRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITEIEGVIDNITVGKDRQQEIVVKGANETRSYLASGTSRLKVEIGQ
SVARGEVLTEGSIEPKNFLSIAGLTATEEYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHNFTDANREAFKERKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMKRYSKVDIEKDDVTQPGLE
NQVTVE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataaattccattacatgaaaataggactcgcttcacctgaaaaaatt
cgttcttggtcatatggtgaggtcaaaaagccagaaacaattaactaccgtacgttaaaa
ccagaaaaagatggtcttttctgtgaaagaattttcggaccaacaaaagactgggaatgt
agttgtgggaaatataaacgtgtacgctataaaggtatgatttgtgaccgttgtggtgtt
gaagttacaaaatcaaaagtacgtcgtgaacgtatgggacacattgaattagcagcacct
gtgtctcacatttggtacttcaaagggatcccaagccgtatgggtctcttattagacatg
tcaccacgtgcattagaagaagtgatttactttgcttcatacgttgtggttgatccaggc
ccaacaggtttagagaagaaaacattactttcagaagcagaattccgtgattactatgac
aaattccctggtcaattcactgccaaaatgggtgcagaagggattaaagacttattagaa
gaaatcaacttagatgaagagttgaaaatgcttcgtgatgagttggaatctgcgacaggt
caacgtttaacacgtgccatcaaacgtttagaagttgtggaatcattccgtaactcaggc
aacaacccagcatggatgattttagatgtactacctattattccacctgaaatccgtcca
atggtacaacttgatggtggccgttttgcgacaagtgacttaaacgatttatatcgtcgt
gtcatcaaccgtaacaaccgtttaaaacgtttattagatttaggtgcgcctggcatcatc
gtacaaaacgaaaaacgtatgttacaagaagctgtggatgcattaatcgataacggtcgt
cgtggtcgtccggtcacaggtccaggtaaccgtccacttaaatcactttcacacatgttg
aaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgtcgactattctggt
cgttcggttatcgcggtagggccaaacttgaaaatgtatcaatgtggtctaccaaaagaa
atggcattagaattgttcaaaccgtttgtcatgaaagaactcgtacaacgtgaaattgcg
acaaacattaaaaacgcgaaaagtaaaattgagcgtacagaagatgaagtttgggatgta
ttagaagatgtcattatcgaacacccagtattacttaaccgtgcaccaacgttacacaga
ttgggtatccaagcgttcgagccgactttagttgaaggtcgtgcgatccgattacaccca
cttgtaacaacagcttataacgccgactttgatggtgaccaaatggcggttcacgtacct
ttatcaaaagaagcacaagctgaagcacgtatgttaatgcttgccgctcaaaacatcttg
aaccctaaagatggtaaaccagttgttacaccgtctcaggacatggttttaggtaactac
tatttaacattagagcgtaaagatgcagtcaatacgggtatgatgttcaatgatacgaat
gaagtcattaaagcttatgcgaatggacacgttcacttgcatacgcgtatcggtgttcaa
gcgtcatcattcaacaacccaacatttactgaagagcaaaatcgcaaaatcttaacaact
tctgtaggtaaagtgatctttaacgaaattattccagattcatttgcatacattaacgaa
ccaacagcgacgaacttagagaagagtacgcctgataaatatttcgttgatgcgtctgaa
cttggagaaggtggtttagctgagtactttgaaaacactgaactcgtgccaccattcaac
aaaaaattcttaggaaatattatcgcagaagtgttcaatcgcttcagtattacagatacg
tctatgatgcttgacttaatgaaagacttaggtttcaaatactcttcaaaagcaggtatt
acagttggtgtagctgacatcgtggtattacctgataaacaagagattttagacgagtct
gagaaattagttgaacgtgtacaaaaacaatttaaccgtggtttattaacagaagaagaa
cgttacaatgcggtgattgaaatttggacaaatgcgaaagatagaatccaagcgaaactg
atgaagtctcttgataagacgaacccaatcttcatgatgagtgactctggtgcccgtggt
aacgcctctaactttacgcaacttgctggtatgcgtggtttaatggccgctccatcaggt
aaaattatcgaacttccaatcacatcatcattccgtgaaggtttaacggtattagagtac
tttatctcgactcacggtgcgcgtaaaggtcttgccgatacagcacttaagactgccgac
tcaggttacttaacacgtcgtctcgttgacgttgctcaagacgttatcgtacgtgaagaa
gactgtggtacggatcgtggtttactcgtttcagatatcaaagaaggtacagaaatgatc
gaaccatttatcgaacgtattgaaggacgttattctaaagaaacagtacgtcacccagag
acagacaaaatcatcattcgtccggatgaattgattacacctgaaattgcgaaagagatt
acagatgcgggcattgaagaaatgtacatccgttctgcatttacatgtaacacacgtcac
ggtgtatgtgaaaaatgttacggtaaaaacctagcaactggtgaaaaagtagaagtcggt
gaagcagtcggaactatcgctgcacaatctatcggtgaaccaggtacacagttaacaatg
cgtacattccatacaggtggggtagccggaagcgatatcacgcaaggtttacctcgtatc
caagagattttcgaagcacgtaaccctaaaggtcaagcagtgattactgaaattgaaggt
gtcattgataacatcacagtgggtaaagacagacaacaagaaatcgttgttaaaggtgct
aacgaaacacgttcttaccttgcatcaggaacatcacgtctgaaagtcgaaatcggccaa
tccgttgcacgtggtgaagtcttaacggaaggttcaatcgagccgaaaaacttcctttct
atcgctggtttaacagcaacagaagagtacttacttaaagaggtacaaaaagtttaccgt
atgcaaggtgtagaaatcgacgacaaacacgttgaggtgatggtacgtcaaatgttacgt
aaagtgcgaatcattgaagctggtgacacgaaattattaccaggttcacttgttgacatc
cacaacttcacagatgcaaaccgtgaagcgtttaaagagcgtaaacgtccagcaactgca
aaaccagtattgctcggtattacaaaagcgtctcttgaaacagaaagcttcttatctgca
gcatcattccaagaaacaacacgtgtcttaactgacgcagcgattaaaggtaaacgtgat
gatcttctcggccttaaagagaacgttattatcggtaagttaatccctgcaggtacaggt
atgaaacgttatagtaaagttgatattgaaaaggatgatgtgacacagccaggtcttgaa
aatcaagtgactgtagaataa
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integrated database retrieval system
