Streptococcus dysgalactiae subsp. equisimilis 167: SDSE167_0007
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Entry
SDSE167_0007 CDS
T02870
Symbol
trcF
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sdq
Streptococcus dysgalactiae subsp. equisimilis 167
Pathway
sdq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SDSE167_0007 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdq03400
]
SDSE167_0007 (trcF)
Enzymes [BR:
sdq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SDSE167_0007 (trcF)
DNA repair and recombination proteins [BR:
sdq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SDSE167_0007 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
AAA_22
RecG_dom3_C
AAA_16
adh_short
Motif
Other DBs
NCBI-ProteinID:
BAN92449
LinkDB
All DBs
Position
5521..9021
Genome browser
AA seq
1166 aa
AA seq
DB search
MNILELFSQNKKIQAWHSGLASLDRQLVMGLSGSSKALAMASAFLDSQEKIVVMTSTQNE
VEKLASDLSSLLGEELVYQFFADDVAAAEFIFASMDKALSRIETLQFLRNPKSQGVLIVS
LSGLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDIL
DIYEITQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFINPASDLIFEASDFQRGIE
QLEKALQTAQDDKKSYLEDVLAVSKNGFKHKDIRKFQSLFYEKEWSLLDYIPKGTPIFFD
DFQKLVDKNARFDLEIANLLTEDLQQGKALSNLNYFTDNYRELRHYKPATFFSNFHKGLG
NIKFDQMHQLTQYAMQEFFNQFPLLIDEIKRYQKNQTTVIVQVESQYAYERLEKSFQDYQ
FRLPLVSANQIVSRESQIVIGAISSGFYFADEKLALITEHEIYHKKIKRRARRSNISNAE
RLKDYNELAVGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSDRISLPIDQISSL
SKYVSADGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFSFSPDDDL
QRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDH
KQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIG
THRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGGQVFYVYNKVDTIDKKVAEL
QELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRD
LSIRGAGNILGASQSGFIDSVGFEMYSQLLEQAIASKQGKTTVRQKGNTEINLQIDAYLP
DDYISDERQKIDIYKRIREIQSREDYLNLQDELIDRFGEYPDQVAYLLEIALLKHYMDNA
FAELVERKNSQVIVRFEVTSLTYFLTQDYFEALSKTHLKAKISEHQGKIDIVFDVRHQKD
YTILEELMLFGESLSEIKFRKTASTS
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgaatattttagaattatttagtcagaataagaaaatccaggcctggcactccggatta
gcgtccttagacaggcagctagttatgggattatctgggtcaagtaaagcattagcaatg
gcttctgcttttttggactcccaagaaaaaatagttgtgatgacatcaactcaaaatgaa
gttgaaaaattagccagcgatttatcaagtctacttggagaagaattagtctatcaattt
tttgcagacgatgtggctgcagcggaatttatctttgcgtcaatggataaagctctatca
agaatagaaaccctgcaatttttaaggaatcctaaatctcagggcgttttaattgttagt
ttatcaggcttaagaactttattgccaaacccagatgtttttacaaagagtcagattcaa
ctaacagttggagaagattatgatagtgatactcttactaaacaactgatgacaattggc
tatcagaaggtctcacaggttattagtccgggagaatttagccgtcgaggggatatttta
gatatctatgagattacacaagaattgccttatcgattggaattttttggcgatgatatt
gatagtattaggcaatttcatccagaaactcaaaaatcttttgaacaactagaaggtatt
tttattaatccagcaagtgatcttatttttgaggctagtgattttcaacgtggcattgag
caattagaaaaggctctacaaacagcacaagatgataaaaaatcttatttagaagatgta
ttagctgtttcaaaaaacggttttaaacataaggatatccgtaaatttcaatcattattt
tatgaaaaagagtggtcattattagattatattcctaagggaacgccaatcttttttgat
gattttcaaaaactagttgataaaaatgcaagatttgatttagagattgctaatctcttg
acagaagatttacagcaaggaaaggctctttccaatcttaactactttacagataattat
cgagagcttaggcactataagccagcgacattcttttcaaattttcataagggacttgga
aatatcaaatttgatcagatgcatcagctaactcagtatgccatgcaggaattttttaat
caatttcctttgttgattgatgagattaaacggtatcaaaaaaatcaaacaacggttatt
gtacaggtagagtctcagtatgcttacgaacgacttgaaaaatcttttcaagattaccaa
tttcgccttcctttagtgagtgctaatcaaattgtttcacgtgaatcacaaattgtaatt
ggagctatctccagtggtttttattttgctgatgaaaagttagcgttaatcacagagcat
gaaatttatcataaaaagatcaaacgacgcgctagacgatctaatattagcaatgctgag
cgtttgaaagattacaatgagttagcagtaggtgattacgtggttcataatgtccatggt
atcggtcgctttcttggaattgaaacgattcagattcagggaatccatcgagattacgtt
actattcaatatcaaaattcagaccgtatttctcttccaattgaccaaattagtagctta
tcaaaatacgtttctgctgatggaaaagaacctaaaattaataaactcaatgatggtcgt
ttccaaaagacaaagcaaaaggtcgctagacaagtagaggatattgctgatgaccttcta
aaattatatgctgaaagaagtcagcaaaaaggattttcattttcaccagatgatgacttg
cagcgcgcttttgatgatgattttgcttttgtagaaacagaagatcaacttaggtctata
aaggaaattaaagctgatatggagagcatgcagcctatggatcgtcttttagtaggcgat
gtaggatttggtaagacagaagtagctatgagggcagcctttaaagcggtgaatgatcac
aaacaagtagctgtcttagttccaaccacagtcttggcccagcagcattatgaaaacttc
aaagcacgctttgaaaattaccctgttgaggttgacgtcttaagtcgtttccgtagtaaa
aaagagcaagctgaaacactagaacgtgtacgaaaaggtcaaattgacattattatcgga
acccatcgactcctatcaaaagatgtggtcttttctgatttaggattaattgtgattgat
gaagaacaacggtttggtgttaagcataaagaaactttaaaggaattaaaaactaaggtt
gacgtcttaaccttaacagctactccgattcctagaaccttacacatgtctatgttaggt
atccgagatttatcggttattgagaccccgccgaccaacagatatcctgttcaaacttat
gtattagaaaacaatcctggtctagtgagggaagctattatccgagaaatggatcgtgga
ggacaagttttttatgtttacaacaaagttgacaccattgacaagaaggtggcagaacta
caagaattagttccagaagcttctattgggtttgtccatgggcaaatgagtgaaattcaa
cttgaaaataccttgattgactttataaatggtgattatgatgtccttgtggctacaaca
atcatcgaaacaggagttgacatttctaatgtaaacactttgtttattgagaatgctgat
catatgggattgtcaactttatatcaactgagggggcgcgtcggaagaagtaatcgtatt
gcctatgcttacctgatgtatcgtcctgataaggtcctaacagaagtctctgaaaaacgt
ttagaggctattaaaggctttactgaattaggttcaggcttcaagattgctatgcgagat
ttgtctatacgaggagcaggtaatattttaggggcttctcaaagtggctttattgattcg
gtcggttttgaaatgtattctcagttattggaacaggctattgctagcaagcagggaaaa
acgactgttcgtcaaaaaggtaatactgaaatcaatcttcagattgacgcctatttgcca
gatgattacatatcagatgagcgtcaaaaaattgacatttacaagcgtattcgagaaatt
caatcaagagaagattatctcaatttgcaggatgagctgatagatcgttttggagagtat
cctgatcaagttgcctatttgttagagatagctctgctaaaacattatatggacaatgcc
tttgcagaattagttgaacgcaaaaatagtcaggtcattgttcgatttgaagtaacttct
ttaacttatttcttaactcaggattatttcgaagccttatcgaaaacccatcttaaagct
aaaattagtgaacatcaggggaaaatcgatatcgtcttcgatgttcgccaccaaaaagac
tataccatcttagaagaattgatgttatttggagaaagccttagtgagattaaattcaga
aaaacagcctcaacctcttaa
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integrated database retrieval system
