Streptococcus dysgalactiae subsp. equisimilis 167: SDSE167_0139
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Entry
SDSE167_0139 CDS
T02870
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sdq
Streptococcus dysgalactiae subsp. equisimilis 167
Pathway
sdq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SDSE167_0139 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdq03021
]
SDSE167_0139 (rpoC)
03400 DNA repair and recombination proteins [BR:
sdq03400
]
SDSE167_0139 (rpoC)
Enzymes [BR:
sdq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SDSE167_0139 (rpoC)
Transcription machinery [BR:
sdq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SDSE167_0139 (rpoC)
DNA repair and recombination proteins [BR:
sdq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SDSE167_0139 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BAN92545
LinkDB
All DBs
Position
106920..110561
Genome browser
AA seq
1213 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPMDTPLEPKSLLTEREYREKLQEYGHGSFIAKMGAEAIQDLL
KRVDLAAEIAELKEELKSASGQKRIKAVRRLDVLDAFHKSGNKPEWMVMNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVAKEYAGNVKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEDAGREGEGMIFKDKDEAVMAYRNGYAHLHSRVGI
AVDSMPNKPWKDSQRHKIMVTTVGKILFNDIMPEDLPYLQEPNNANLTEGTPDKYFLEPG
QDIQEVIDRLDINVPFKKKNLGNIIAETFKRFRTTETSAFLDRLKDLGYYHSTLAGLTVG
IADIPVIDNKAEIIDAAHHRVEEINKAFRRGLMTDDDRYVAVTTTWREAKEALEKRLIET
QDPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRAITDGKEVTETL
EERLQGRYTRKSVKHPETGEVLIGADQLITEDMACKIVDAGVEEVTIRSVFTCATRHGVC
RHCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQE
IFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVVPFTARMKVEVGDE
VNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRK
VRVMDPGDTDLLPGTLMDISDFTDANKDIVISGGIPATSRPVLMGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNIEPQAINDVEVIDKP
EVSEETVAATETE
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgttttaaaagtatgcaaatcacattagcctcaccaagtaaggtc
cgttcatggtcttatggtgaagttaaaaaacctgaaacaatcaactaccgtacactgaaa
ccagaacgtgaaggactctttgacgaagtcatctttggtccaacaaaagactgggaatgt
gcgtgtgggaaatacaaacgtatccgttataaaggaatcgtgtgtgaccgctgtggggtt
gaggtaactcgtgccaaagtacgtcgtgaacgtatggggcatatcgagttaaaagctcct
gtatcacacatctggtacttcaaagggattccatcacgtatgggattgactcttgacatg
agccctcgtgcccttgaagaagttatttattttgcggcttatgtggtcattgacccaatg
gatactccgcttgaaccaaaatcattattaacagaacgcgaataccgtgaaaaacttcag
gagtatggacacggatcattcattgctaagatgggtgctgaagccattcaagatctcttg
aaacgtgttgatttggcagctgaaatcgctgaattaaaagaagaattgaaatctgcttct
ggtcaaaaacggattaaggcagttcgtcgtttggacgtgcttgatgccttccacaaatct
ggaaataaaccagaatggatggttatgaacatcttgccagttattccgccagatcttcgt
ccgatggttcaattggatggtggccgttttgcggcatcagatttgaatgacttgtaccgt
cgtgtcattaaccgtaacaaccgtttggcacgtttgttagaacttaatgccccaggtatt
attgttcaaaatgaaaagcggatgcttcaagaggcggtagatgcgctgattgataacggt
cgtcgtggtcgtccaattactggaccaggtagtcgtccattgaaatcattgagccacatg
cttaaaggtaaacaagggcgtttccgtcaaaacttgcttggtaaacgtgtagacttctct
ggacgttccgttatcgctgttggtccgacccttaaaatgtaccaatgtggtgtcccacgt
gaaatggctatcgaactctttaaaccatttgtaatgcgcgagattgttgccaaagaatat
gctggtaacgttaaagccgctaaacgtatggttgaacgtggagacgaacgcatctgggat
atcttagaagaagttatcaaagaacacccagttcttcttaaccgtgcaccgaccctccac
agacttggtattcaagcttttgaacccgttctgattgacggtaaggcacttcgtcttcac
ccacttgtgtgtgaggcttacaatgccgacttcgatggagaccaaatggccatccacgtg
ccactttcagaagaagcacaagctgaagctcgtcttttgatgcttgctgcagagcacatc
ttgaaccctaaagatggtaaaccagttgttactccatctcaggatatggttcttggtaac
tactatcttacgatggaagatgctggtcgcgaaggcgaaggcatgatcttcaaggataaa
gacgaagctgtgatggcatatcgtaatggttatgctcacttgcatagtcgtgtgggtatc
gctgttgacagcatgccaaacaaaccttggaaagatagccaaagacataaaatcatggtg
acaactgttggtaagattttgtttaacgacatcatgccagaggaccttccttaccttcaa
gagccaaacaatgccaacttgacagaaggaacacctgataaatacttccttgaacctggt
caagacatccaagaagtgattgatcgcttagacatcaatgtgccatttaagaagaaaaac
cttggtaacatcattgcggaaaccttcaaacgtttccgtacaacagaaacatcagccttc
cttgaccgtttgaaagaccttggttactaccattcaacccttgctggtttgacagtgggt
atcgctgacattcctgttattgataataaagctgaaatcattgatgctgctcaccatcgt
gttgaagaaattaacaaagccttccgtcgtggtttgatgacagatgatgaccgttatgtt
gccgttacaacaacatggcgtgaagctaaagaagcccttgaaaaacgtctgattgaaaca
caagatcctaagaacccaatcgttatgatgatggactcaggagctcgtggtaacatctct
aacttctcacagcttgcgggtatgcgtggtttgatggctgctcccaacggacgcataatg
gaacttcctatcttgtcaaacttccgtgaaggtttgagcgttttggaaatgttcttctca
acccacggtgcacgtaaagggatgaccgatacggcccttaaaacagccgactcaggttac
cttactcgtcgtttggttgacgttgcccaagatgttatcattcgtgaggacgattgtggc
actgatcgtggtcttcttatccgtgctattacagatggtaaagaagttaccgaaacgctt
gaagagcgtcttcaaggtcgttacacacgtaaatcagtcaaacaccctgaaactggtgaa
gtcttgattggtgctgaccaattaatcactgaagacatggcttgtaagattgttgatgca
ggtgttgaagaagtgaccattcgttctgtctttacctgtgcgactcgtcatggagtttgc
cgtcactgttatggtatcaacttggcaactggtgatgctgttgaagtgggtgaagcagtt
ggtactattgctgcccaatctatcggtgagcctggtactcagcttaccatgcgtaccttc
cacacgggtggtgtagcctcaaataccgatatcacacagggtcttcctcgtattcaagaa
atctttgaagcgcgtaaccctaaaggggaagcggtcattactgaagtgaaaggtaatgtc
gtcgagattgaagaagatgcgtcaactcgtaccaagaaagtctacgttcaaggtaaaact
ggtatgggtgaatacgtcgtaccatttacagcacgtatgaaagttgaagttggcgacgaa
gttaatcgcggagctgctcttacagaagggtcaatccaaccgaaacgtctccttgaagta
cgtgataccttgtcagttgaaacttatcttcttgcagaagtgcaaaaagtttaccgtagc
caaggggtagaaatcggggataaacacgttgaggtaatggttcgccaaatgcttcgtaaa
gttcgtgtcatggatccaggtgatacagacctccttccaggaacattgatggatatttct
gatttcacagatgctaataaagatattgttatctctggtggtatccctgcgacatctcgt
ccagttcttatgggaattacgaaagcttcccttgaaaccaattccttcttatcagctgca
tccttccaagaaacaactcgtgttcttacagatgctgccatccgtggtaaaaaagatcac
cttcttggtcttaaagaaaatgttatcattggtaaaatcattccagctggtactggtatg
gcgcgctaccgtaacattgaaccacaagcaatcaatgatgttgaagttattgacaagcca
gaagtttctgaagaaacagttgctgcaactgaaacagaataa
DBGET
integrated database retrieval system
