Sulfuricella denitrificans: SCD_n00003
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Entry
SCD_n00003 CDS
T02857
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
sdr
Sulfuricella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdr03032
]
SCD_n00003 (gyrB)
03400 DNA repair and recombination proteins [BR:
sdr03400
]
SCD_n00003 (gyrB)
Enzymes [BR:
sdr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
SCD_n00003 (gyrB)
DNA replication proteins [BR:
sdr03032
]
Prokaryotic type
DNA Topoisomerases
SCD_n00003 (gyrB)
DNA repair and recombination proteins [BR:
sdr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SCD_n00003 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BAN33853
UniProt:
S6AAL6
LinkDB
All DBs
Position
2682..5072
Genome browser
AA seq
796 aa
AA seq
DB search
MSEYTSDSIKILKGLEAVRKRPGMYIGDTSDGSGLHHMVFEVVDNAIDEALAGHCNEIKV
VIHPDNSISVHDNGRGIPTGIKDDDEFKRSAAEIVMTELHAGGKFDSNSYKVSGGLHGVG
VSCVNALSKWLKLTIRRDGQTHSMEFRCGVPVEPLKLIGQTEKHGTDVHFIADEEIFGLV
EYHYEILAKRLRELSFLNNGVHIELVDQRTGKSDNFAFSGGVKGFVEYVNRSKTVLHPKV
FYAIGEKDGMTVEVAMQWNDSYQESVQCFTNNIPQRDGGSHLTGLRNAMTRTLNTYIEQS
EQAKKAKVETAGDDMREGLTCVLSVKIPDPKFSSQTKEKLVSSEVMPVVQEIVSAKLAEY
MLENPNDAKIICGKIVDAARAREAARKAREITRRKGVLDGMGLPGKLADCQEKDPALSEI
YLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDRLVSSQEIATLIVALGTGIGK
DEYSAEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKHG
KQERYLKDDHELKQYMLQMALSEAELVTEVGKEPISKAALEEVAKEFLLAEAIVERLSRI
ISEPILYALLKNFVLDLSDLASANESAEQLKKALVNEQYTVSASYNEATESFRLKISKMV
HGNLQISYLDRDFQQSGDYAQLLKTAQVLHGLLKEGASIKRGERSQPVSEFKAAMDWLLE
EVKRGLGIQRYKGLGEMNPGQLWETTMDPQVRRLLRVQIDDVIAADEIFTTLMGDQVEPR
RAFIETNALGARNLDI
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatatacttccgatagcatcaaaatactgaagggcctggaagccgtgcgcaaa
cggcccggcatgtacattggagataccagtgatggttcagggttgcaccatatggtattt
gaggtggtagacaacgccatagatgaagcacttgccggccattgcaacgaaataaaagtc
gttattcatccggataattccatcagcgtacatgacaatggccgcgggattcccaccgga
atcaaggacgatgacgaattcaagcggtctgcggcagaaattgtcatgacggagttgcat
gccgggggaaaattcgacagcaattcatacaaggtttccggggggttgcatggtgtaggc
gtgtcctgcgtcaacgccctttcaaaatggttgaaattaactattcggcgtgatgggcaa
acgcattccatggagtttcgttgtggcgtaccagtcgaaccactaaagcttattggccag
actgaaaaacatggtactgatgtacattttattgcagatgaggaaatatttggtttggtc
gaatatcattacgagattctggctaaacgactgcgcgaactttcgtttcttaacaatggc
gtacacattgaactcgttgaccagagaacagggaaaagtgataactttgcttttagtggt
ggtgtaaaggggtttgttgaatatgtaaaccgcagtaaaactgtcctgcaccccaaggtt
ttttatgcaataggtgaaaaagacggcatgactgtggaagtagcaatgcagtggaatgac
tcctatcaggaatctgttcaatgttttactaataacatcccacagcgtgacggaggaagt
catttgacgggactccgtaacgcaatgacacgtacattaaatacgtatatagaacaaagc
gagcaggcaaaaaaagcaaaagtagaaactgctggcgatgatatgcgcgagggactgacg
tgcgtattgtcggtaaaaatccctgacccaaaattttcatcacagaccaaagaaaaattg
gtttcttccgaagtgatgccagtagtacaggaaatcgtttctgcgaaacttgcagaatat
atgctggaaaacccgaatgacgctaaaattatttgtggaaaaattgttgatgcagcgcgt
gcacgagaagcggcgcgcaaagcacgggaaataacgcgtcgaaaaggcgtgctggacggc
atgggtttgccgggcaagttggcagactgtcaggaaaaagaccctgcattgtctgaaatt
tacctggtagaaggagattcagccggaggttcggcgaagcagggaagggataggaaattc
caagcgatccttcccctgaaaggaaaaattctcaacgttgagcgagctcgcttcgaccga
ctggtgtcttcccaggaaatcgcaactctgatcgttgctctgggtacaggcatcggcaag
gatgaatactcagcagagaaattgcgctatcaccgcattatcatcatgaccgacgcggat
gtggacggttcccatattcgcaccctgctactcacttttttctacaggcaaatgcctgaa
ctggtggaacggggtcatatctacatagcccagcctccgctgtacaaggtcaaacatggt
aagcaggaacgctacctgaaggatgaccatgaattgaagcaatacatgctgcaaatggcg
ttgagcgaggctgaactggttacggaggttggcaaagagccgatcagcaaggccgctcta
gaggaagtggccaaagaattcctgctggccgaagcgattgtcgagcgcttgagccgtatt
atctcagagccaatcctctacgctttgcttaaaaacttcgtgcttgacctgagtgatctt
gcttcggcgaatgagagcgcagaacagcttaaaaaagcgttggttaacgagcagtatact
gtttcggcttcctacaatgaagctacagaaagtttccgactgaaaataagcaagatggtg
cacggaaatttgcagatcagctatcttgatcgggattttcagcaaagcggcgactacgca
cagctattgaaaacagcacaagtgctgcatggcttgcttaaagaaggtgcaagcatcaag
cgtggagaacgatcccagcctgtcagcgagttcaaggctgcaatggactggctgctggaa
gaggtgaaacgcggcttgggtatccagcgctacaagggtttgggtgaaatgaatcccggg
cagctttgggaaacaaccatggatcctcaggtaagacggctgcttagggtgcagattgac
gatgtaatcgccgctgacgaaatttttaccactttgatgggcgaccaggttgaaccgcga
cgtgcttttatcgaaacaaacgcacttggagcaagaaacctcgacatctga
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