Sulfuricella denitrificans: SCD_n00214
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Entry
SCD_n00214 CDS
T02857
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sdr
Sulfuricella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdr03016
]
SCD_n00214
Enzymes [BR:
sdr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SCD_n00214
Transfer RNA biogenesis [BR:
sdr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SCD_n00214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
BAN34063
UniProt:
S6AAT8
LinkDB
All DBs
Position
complement(223203..225047)
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AA seq
614 aa
AA seq
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MNVLYEEDGAIKVASVMADNTSSLQVETPHGKRSKIKAGNVLLRFETPGIAGFMEAAEAA
AAELDPIFLWEVSGTEEFAFVDLGREYYGHAPSPVEAAATALKLHTAPMYFYKKGKGRYK
AAPEENLKAALASEEKKRKQAETIAAHVAEMVAGRLPEMFTPQIVEALLYSPDKNTLEFK
ALDKACAETNLNPVKLLDTCGAIPSAHAYHLNRFLREHFPEGTDFPEVEILHPQGDPAHS
DAQAFSIDDAATTEIDDAFSIKRLDNGNWRIGVHIAAPGLGFAPGDRLDEIASQRLSTVY
MPGQKITMLPEKLVERYTLAAGRRCPALSLYLEVTPEYAVVGQESALDHVEIAANLRHEA
LEPVFNGASVLSREGDYAWKDELLLLWDFTTKLKEGRGKGESSRNFPDYNFAVVDDRVSI
TERHRDTPIDRVVSELMIHTNATWGKELAEADYAGIYRNQEGGKVRMSVSPGAHQGLGVT
HYMWSSSPLRRYVDLVNQRQLIARLEGKPAPYGNRDERLLIAMRDFDLAYEAYGNIQDQM
ERYWCLRWLQQEQVSETGAVVVKENLVKLDHLPLFIRVPLLPEVPPGSRVSLEVSKVDLL
EVTCQCRYVGPLEQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttttgtacgaagaagacggcgccatcaaggtagccagcgtcatggccgacaac
acctcctccttgcaggtggaaacaccgcatggcaaacgctccaagatcaaggccggcaac
gtgctgttgcgctttgaaacgcctggtattgccgggttcatggaagcggcagaagcagcg
gcggcggaactcgatccgatttttctgtgggaggtcagcggcaccgaggaattcgctttc
gttgacctgggccgcgaatactacggccatgcgccttccccggtcgaggcggcggcgaca
gcgctgaaactgcataccgcgccgatgtatttctacaagaaaggcaaaggtcgctacaag
gccgcgccggaggaaaacctcaaggcagcgctggcttccgaggagaagaaacgcaagcag
gcagaaaccatcgcagcgcatgtggctgaaatggtagcgggacgcctgccagaaatgttc
acgccgcaaatcgtggaagccttgctttactcgccggacaagaacacgctcgaattcaag
gcgctcgacaaggcctgcgctgaaaccaatctcaatccggtgaagttgctggacacgtgt
ggcgcgatcccttctgctcatgcttaccacctgaaccgctttctgcgcgagcattttccc
gaaggcacggacttccccgaagtcgaaattcttcaccctcagggcgaccccgcgcattcg
gatgcgcaggccttcagcatcgacgatgctgccactaccgaaattgatgacgccttctcg
atcaagcgcctggataacggcaactggcgtatcggcgtccatatcgccgcgccaggcctg
ggcttcgcgccgggcgaccgtctcgatgaaatcgcctcgcagcggttgtccacggtgtac
atgccgggtcagaagatcaccatgctgccggagaaactggtggagcgctacaccctggcc
gcaggtcgtcgttgccccgcgctgtcgctgtacctcgaagtaacaccagaatatgccgtg
gtcggccaggaaagcgcgctggatcacgtcgaaatcgccgccaacctgcgccacgaggcc
ctggagccggtattcaacggcgcgtccgtgctcagccgggagggcgattacgcctggaaa
gacgagctcctgctgttatgggatttcaccaccaagctcaaggaaggccggggcaagggg
gaaagcagccggaatttcccggattacaatttcgcggtggtggacgatcgcgtttcgatt
accgagcgccaccgcgatacccctatcgaccgggtggtgtcggagctgatgattcatacc
aatgccacctggggcaaggagctggcggaagccgactatgccggcatctaccgcaaccaa
gaaggcggcaaggtgcgcatgagcgtgtcgccgggcgcgcaccagggcttgggcgtaacg
cactacatgtggtcgagttcgccgttgcgccgctatgtcgatctggtcaaccagcgccag
ctgatcgcccgactggaaggcaagccggcaccctatggcaaccgcgatgagcgcctgctg
atcgcgatgcgcgatttcgatctggcctacgaagcttacggcaacatccaggaccagatg
gagcgctactggtgcctgcgctggctgcagcaggaacaggtcagcgaaaccggcgcggtg
gtggtaaaggaaaacctggtcaagctcgaccacctgccgctgttcatccgggtgccgcta
ctgcccgaagtgccgccaggcagccgggtttcgctcgaggtgtcgaaagtggacctgctc
gaggtgacatgccagtgccgctatgtaggccccctggagcaatga
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