| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta
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| KO |
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| Organism |
sdr Sulfuricella denitrificans
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:sdr00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCD_n00619 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:sdr03021]
SCD_n00619 (rpoC)
03400 DNA repair and recombination proteins [BR:sdr03400]
SCD_n00619 (rpoC)
Enzymes [BR:sdr01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCD_n00619 (rpoC)
Transcription machinery [BR:sdr03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCD_n00619 (rpoC)
DNA repair and recombination proteins [BR:sdr03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCD_n00619 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
629367..633569
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| AA seq |
1400 aa
MKALLDLFKQVTQEEEFEAIKIALASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQSKVRRERMAHIELASPVAHIWFLKSL
PSRLGMVLDVPLRDIERVLYFEAYVVTNPGMTPLNRAQLLTEDDYLTKVEEFGDEFHACM
GAEGVRELLRTLNIEVEVEKLRKDLSETGSETKIKKLAKRLKVLEAFQKSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKKMALELFKPFIFHKLEVLGLATTIKAAKRMVEDEIPEVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQIEA
RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTREKINAKGEGTLFGTISEISRAYESR
QVELHAKVTARIKEYELDEEGNKREKITRYETTVGRALLSEILPVGLPFPLINKALKKKE
ISKLINASFRRCGLRETVIFADKLMYTGFAYAARAGISICVDDMLVPTEKEQLIGASEKE
VKEIEAQYTSGLVTQGERYNKVVDIWGRCGDQVAKAMMNQLGTEPVVDRDGKTVSQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVTENDCGTAEGMALKALVEGGEVVEPLRERIL
GRTTAVDVVNPETSETVYEAGTLLDEDAVEAIEQLGIDEVKVRTPLTCETRYGLCAKCYG
RDLGRGYEVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASSVEIKSNGVARF
ASGMRYVTNAKNEQIVISRSGEVIITDDNGRERERQKIPYGSTLLASDGSVAKAGQVLAT
WDPHTRPIITEYAGTARFDNVEEGVTVAKQLDDVTGLSSLVVIDPKRRGTTQFKGLRPQV
KLLDGSGQEIKIAGTELPVNITFQLGSIITVKDGQQVNVGDVLARIPQETSKTRDITGGL
PRVAELFEARSPKDAGLLAEVTGIVSFGKDTKGKQRLVITDLDGVAHEYLITKDKHVTAH
DGQVVNKGESIVDGPADPHDILRLRGVEALARYITDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVTVVDPGETRFIQGEQVERADVLGENEKMVVEGKEPAVYDYMLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAFHTARRRQKSGEGLV
MATEVIEESPAAPEGSELSA |
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| NT seq |
4203 nt +upstreamnt +downstreamnt
atgaaagcactgctcgatttatttaaacaggttactcaggaagaagagttcgaagcgatc
aagatcgcactggcttctccggagaaaatccgttcctggtcctacggtgaagtaaagaag
ccggagaccatcaactatcgcaccttcaaacctgagcgcgatggcctattctgcgccaag
attttcggaccgatcaaggactatgaatgtctttgcggcaagtacaagcgtctcaagcat
cgtggtgtaatctgcgagaaatgcggcgttgaagtcacccagtccaaagttcgccgtgag
cgtatggcccacatcgagctggcctccccggttgcacacatctggtttctcaagtcgctg
ccatcacggctcggcatggtgctggacgtaccgttgcgcgatatcgagcgggtgctgtac
tttgaagcttacgtagtgaccaatccgggcatgacgccgcttaatcgcgcccaattgctg
accgaggacgactacctgaccaaggttgaagaattcggcgacgaattccacgcctgtatg
ggtgcagaaggtgtacgcgagctgttgcgcaccctcaacatcgaagttgaggtcgaaaaa
ctccgcaaggatttgtcggaaaccggttccgaaaccaagatcaagaaactcgccaagcgc
ctcaaggtgctggaggcgttccagaaatccggcatcaagccggagtggatgatcctggaa
gtattgccggtgctgccgccggaactgcgtccgctggtgccgctggatggcggccgtttt
gcgacctccgacctgaacgatttgtaccgtcgcgtgatcaaccgcaacaaccgtctgaag
cgtttgctggagctgaaagcaccggaaattatcgttcgcaacgaaaagcggatgctgcag
gagtccgtggattccctgctcgacaacggtcgtcgtggcaaagccatgaccggcgccaac
aagcgcccattgaaatcgcttgccgacatgatcaagggcaagggtggccgcttccgtcaa
aacttgctgggcaagcgcgtcgactactccggccgttccgtgatcgtggtgggcccgcag
ctgaaattgcatcagtgcggcctgcccaagaaaatggctctggaattgttcaagcccttc
attttccacaagctggaagtgctgggtctggctacgaccatcaaggctgccaagcgcatg
gtggaagacgaaattccggaagtctgggacattctggaagacgtaatccgcgagcatccg
gtgatgctgaatcgtgctccgactctgcatcgcctcggtatccaggcgttcgagccggtg
ctgatcgagggcaaggcaatccagttgcatccgctggtttgtgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctggaagcgcaaatcgaggcg
cgcaccttgatgctggcttccaataacgtgttgtctcccgccaacggcgagccgatcatc
gtgccgtcgcaggatatcgtgctgggtctgtattacatgacccgcgaaaagatcaatgcc
aagggcgaaggtacgctgttcggcacgatcagcgagatctcgcgtgcctatgagtcgcgt
caggtcgaattgcatgccaaggtcaccgcgcgcatcaaggaatacgagctggacgaggaa
ggcaacaagcgcgaaaaaattacgcgttacgagactacggtcggccgggctttgctgtcc
gagatactgcctgtcggattgccgttcccgctgatcaacaaagcgctgaagaagaaagaa
atttccaagctgatcaacgccagcttccgccgttgcggattgcgcgaaaccgtgattttc
gccgacaagctgatgtatacgggtttcgcttacgcggctcgtgccggcatctcgatctgt
gtcgacgacatgctggtcccgacagagaaggaacaactgatcggcgcttccgagaaagag
gtcaaggaaatcgaggcgcagtacacctccggtctggtgactcaaggtgagcgctacaac
aaggttgtggatatctggggccgttgcggtgaccaggtggccaaggccatgatgaaccag
ctcggcaccgagccggtcgtcgaccgggatggcaagacggtctcccaggagtcattcaac
tcgatttatatgatggccgattccggcgcccgcggctccgcagcgcagattcgtcagttg
gccggcatgcggggcctgatggccaagcctgacggctcgatcatcgagaccccgattact
gcaaatttccgcgaaggtttgaatgttctgcagtacttcatctctactcacggtgcacgt
aaaggtttggctgacaccgcgctgaagactgcgaactccggttacctcacccgccgtctg
gtggatgtgacccaggatctggtggtcaccgagaacgattgcggcactgccgaaggtatg
gcgctgaaggcgctggtcgaaggcggtgaagtggtcgagccattgcgcgagcgcatcctc
ggtcgcaccactgcagttgatgtggttaacccggagaccagcgagaccgtttacgaggcc
gggactttgctggacgaagatgcagtggaggcgatcgagcaactgggtatcgacgaagtc
aaagtgcgcactccactgacctgcgaaacgcgctacggtttgtgtgccaagtgctacggc
cgcgatctcgggcgcggctacgaggtgaacgtgggcgaggcggtcggcgtgattgcggcg
cagtccattggtgagccgggtacacagctcaccatgcgtaccttccacatcggcggtgcg
gcatcccgtgcggcggcagcaagctcggtcgaaatcaaatccaacggtgtagcgcgcttt
gcctccggcatgcgctacgtgaccaacgccaagaacgaacagatcgtgatttcacgcagt
ggcgaagtgatcattaccgacgacaatggccgcgagcgcgagcgtcagaagattccttat
ggctctaccttgctggcctcggatggctctgttgccaaagccggccaggtgctggcgacc
tgggatccgcatactcgtccgatcattaccgaatacgcgggtacggcacgcttcgacaac
gttgaagaaggcgtcaccgtagccaagcagctcgacgatgtgactggcttgtcctctttg
gtggttatcgatccaaagcgccgtggcacgacccagttcaaggggttgcgtccacaggtt
aagttgcttgatggcagtggtcaggaaatcaagatcgccggcaccgaactgccggttaac
attaccttccagctcggttcgatcattacggtgaaggacggtcagcaggtcaacgtcggc
gatgtgctggcgcggatcccgcaggaaacctccaagacccgtgacattaccgggggtcta
ccgcgcgtggctgaactgttcgaggcgcgttcgccgaaggatgccggcttgctggccgaa
gtcaccggtatcgtgtcgttcggcaaggacaccaagggcaagcagcgtctggtgattacc
gacctggacggcgttgcccatgaatacctgattacgaaggacaagcacgtcaccgctcac
gacggtcaggtggtcaacaagggagagagcatcgtcgacggcccggctgatccgcatgac
attctgcgcttgaggggggtcgaggcgctggcacgctacattaccgatgaagtgcaggac
gtgtaccgcctccagggtgtgaagatcaacgacaagcacatcgaggtgatcgtgcgccag
atgttgcgccgtgtgaccgtggtggacccaggtgagacccgcttcatccagggcgagcag
gtggaacgtgccgacgtgttgggtgaaaacgagaaaatggtggtcgaggggaaagagccg
gctgtttacgattacatgttgctgggtatcaccaaggcgtcgctgtccactgattcgttc
atctccgcagcttccttccaggaaacgacgcgagtgctgactgaggcggcgatcatgggc
aaacgggacgaactgcgtggcctgaaggagaatgtcatcgttggccgcctgatcccagcg
ggtacgggtcttgcattccacactgctcgccgcagacagaagtcgggtgaaggtttggtg
atggctacggaggtaatagaagagtcgccagcagccccggaaggcagcgagctttcggcc
tga |
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