Sulfuricella denitrificans: SCD_n00735
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Entry
SCD_n00735 CDS
T02857
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sdr
Sulfuricella denitrificans
Pathway
sdr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCD_n00735 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdr03021
]
SCD_n00735 (rho)
03019 Messenger RNA biogenesis [BR:
sdr03019
]
SCD_n00735 (rho)
Transcription machinery [BR:
sdr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SCD_n00735 (rho)
Messenger RNA biogenesis [BR:
sdr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SCD_n00735 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
S1CSD-TOTE-2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAN34577
UniProt:
S6B1L2
LinkDB
All DBs
Position
complement(738610..739866)
Genome browser
AA seq
418 aa
AA seq
DB search
MRLSDLKHLPVTELVEMAITNEIEGASRLRKQDLIFALLKNQAKKGESIYGEGTLEVLPD
GFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEIRTPKEGERYFALVKVDQVN
GEPPENSKHKILFENLTPLFPNQPMILERDIKAEENITGRVIDMVAPIGKGQRGLLVASP
KSGKTVMLQHIAHSIAANHPECYLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPATRHV
QVAEMVMEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNMEIHMDRKMAEKRLYPAINV
NRSGTRKEELLIKPDILQKIWVLRKLLYPMDDLEATEFLIDKIKATKNNADFFDSMRR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttatctgatttaaaacacctccccgtcaccgaactggtggaaatggccatcacc
aacgaaatcgagggtgcaagccgcctgcgcaagcaggatttgatttttgccttattgaag
aatcaggccaagaaaggcgaaagcatttacggcgaaggcacgctggaagtcctgccggac
ggtttcggctttctccgttctcctgacacttcctatctggccgggccggacgacatttat
gtcagcccctcgcagattcgccgcttcaacctgcacaccggcgattcgatagagggcgag
atccgcacccctaaagagggcgagcgctatttcgcactggtcaaggtggatcaggtcaac
ggcgaaccgcccgagaactccaagcacaagatcctgttcgagaacctgacaccgctgttc
ccgaatcagccaatgattctggaacgcgatatcaaggcggaagagaatattaccggtcga
gtcatcgacatggtcgcaccaatcggcaagggccagcgcggcctgctggtggcctcacct
aaatcaggcaagaccgtgatgctgcaacatatcgcccactccatcgcggccaaccacccg
gaatgctatctgatcgtactgctgatcgatgagcgcccggaagaagtgacggaaatgcaa
cgctcggtgcgcggcgaagtggtttcctccaccttcgacgaacccgctacacgccatgtt
caggtcgccgaaatggtgatggaaaaagccaagcgcctggtggaacacaaaaaggacgta
gtcattctgctcgactcgatcactcgtttggcgcgtgcctacaacaccgtggtgccgtct
tccggcaaggtgcttaccggcggcgtggatgccaatgcactgcagcgccccaagcgtttc
ttcggcgcggcgcgcaacatcgaagaaggcggctcgctgaccatcatcgccacggcgctg
gtggataccggttcgcgcatggacgacgtgatctacgaggaattcaagggtaccggcaac
atggagatccacatggatcgcaagatggcggaaaaacgcctgtatccagcgatcaacgtc
aaccgctccggcacgcgtaaggaagagttgctgatcaaacccgacatcctgcaaaaaatc
tgggtgctgcgtaaactgctctacccgatggatgatctggaggcaacggaatttctgatc
gacaagatcaaggcaaccaagaacaacgcggactttttcgattcgatgcgccggtaa
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