Sulfuricella denitrificans: SCD_n01050
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Entry
SCD_n01050 CDS
T02857
Symbol
rumA
Name
(GenBank) 23S rRNA 5-methyluridine methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sdr
Sulfuricella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdr03009
]
SCD_n01050 (rumA)
Enzymes [BR:
sdr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SCD_n01050 (rumA)
Ribosome biogenesis [BR:
sdr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SCD_n01050 (rumA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
MTS
Methyltransf_15
Methyltransf_11
TRM5-TYW2_MTfase
Cons_hypoth95
UPF0020
Methyltr_RsmB-F
Methyltrans_SAM
Methyltransf_23
Methyltransf_32
RrnaAD
CMAS
PrmA
Motif
Other DBs
NCBI-ProteinID:
BAN34889
UniProt:
S6AJY5
LinkDB
All DBs
Position
1056149..1057438
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AA seq
429 aa
AA seq
DB search
MTIIESLDHEGRGVAHVEGKTIFIEGALPGETVEYSTFKKKPSYEQATATKILKPSFMRV
TPRCPSFGLCGGCSMQHMEAGAQVAAKQRVLEDNLWHIGKVKAEEMLAAIYGPPWGYRHR
ARVSVKYVRKKERVLVGFHEKRSSFIADMESCEVLPPRISALLMPLRALVEQLSIRERLP
QVEVALGQDVDVLVLRIMDPLNEQDEALLRAFADRHRVQFFLQSKGPDTVQPFYPLDAPE
LNYTLPDFDIVMPFRPTEFTQVNPDINRVLVRRAINLLDPKPGERIADLFCGLGNFSLPI
ARRGADVVGVEGSASLVQRAQANAEVNGLSARARFVEANLFETDAVGLKKLGHFDKMLID
PPCDGAAEVIKALAEDGPQRIVYVSCSPATLARDAGVLVHEKGYRLKAAGVVNMFPHTAH
VESIALFEK
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgaccattattgaatctctcgaccacgaagggcgcggcgtcgcccatgtggaaggcaaa
accatctttattgaaggcgccctgcccggtgaaacggtggaatattccaccttcaagaaa
aagcctagctacgagcaggccacggccacgaaaatcctcaagcccagcttcatgcgcgtc
acgccgcgttgtccgagtttcggcctgtgcggcggctgcagcatgcagcatatggaggcc
ggggcgcaggttgcggccaagcagcgcgtgctggaagacaacctgtggcatatcggcaag
gtgaaggcggaggaaatgctcgccgccatctatggcccaccctggggctatcgccaccga
gcgagggtgtcggtcaaatatgtgcgcaagaaagagcgcgtcctggttggtttccatgaa
aaacgcagcagctttatcgccgacatggagagctgcgaagtgctgccaccgcgcatttcc
gccctgctcatgccactgcgcgcattggtcgaacagctttccatccgtgagcgcttgccg
caggtggaagtagcgctgggtcaggatgtcgacgtgctggtgctgcgcatcatggatccg
ttgaacgagcaggatgaagcgctgctgcgggcgttcgcggacaggcatcgggttcagttt
ttcctgcagtccaagggccccgatacggtgcaaccgttttatccgctggatgcgccggag
ctcaactacaccttgccggatttcgacatcgtgatgccgtttcgacccaccgaattcacc
caggtcaacccggatatcaatcgcgtgttggtgcgccgcgcaattaacttgctcgatccg
aagccgggcgagcgcatcgccgacctgttctgcgggctgggtaatttcagcctgccgatc
gcccggcgcggtgctgacgtggtgggggttgaaggcagcgccagcctggtgcagcgtgcg
caggcgaatgccgaggttaacggtttatcggcgcgggcacgttttgtcgaggcgaatctg
ttcgagacggatgccgtcggcctgaaaaaactggggcatttcgataaaatgctgatcgac
ccgccgtgcgatggcgcggcagaagtgatcaaggcgctggcggaagacgggccgcagcgc
atcgtctacgtgtcgtgcagcccggctacgctggcgcgcgatgccggagtgctggtgcat
gaaaaaggctataggctgaaagccgccggcgtggtcaacatgttcccgcataccgcgcac
gtcgaatccatcgccctgttcgagaaataa
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