Sulfuricella denitrificans: SCD_n01822
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Entry
SCD_n01822 CDS
T02857
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sdr
Sulfuricella denitrificans
Pathway
sdr03410
Base excision repair
sdr03430
Mismatch repair
sdr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SCD_n01822
03430 Mismatch repair
SCD_n01822
03440 Homologous recombination
SCD_n01822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdr03400
]
SCD_n01822
DNA repair and recombination proteins [BR:
sdr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SCD_n01822
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SCD_n01822
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCD_n01822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
BAN35633
UniProt:
S6ACJ7
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All DBs
Position
1843119..1844819
Genome browser
AA seq
566 aa
AA seq
DB search
MPNIASRPYSQPDASRLAASGLHPVLARIYAARGIQEIRQLEHELGALLPYTDMKNIGEM
ARLLADALEADKRLLIIADYDSDGATACTVAMRGLREFGATVDYLVPNRFEYGYGLTPEI
VQLAEARKPDILITVDNGISSVAGVEEANRLGMQVLVTDHHLPGDELPDAACIVNPNQPG
CDFPSKNLAGVGVIFYVMLALRAELRNRGAYTTKPEPNLARLLDLVALGTVADVVKLDDN
NRILVHQGLKRICAGRACSGINALLKVASRKAEKASTYDLGFVVGPRLNAAGRLDDMALG
IECLLTENEEQAYSIAQQLDTLNRERREIEADMQEQALAALEQVEVSENHSLSLYDPNWH
QGVIGILASRLKDKYHRPVIAFARSNNGELKGSGRSIRGLHLRDALDLVAKRKPHLLQKF
GGHAFAAGLTIQENHFEEFTAAFEEIAQSLLTPADLERIIESDGSLETPAMNLHLAKTLT
EQVWGQGFPQPAFQEKFAVKSQRVVGEKHLRLKLGKADQVFDGILFFHNEPLPDWINAVY
RLDVNEYNGSQSLQLMIEYWEEASKG
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacatagcctcccgcccctactcacaacctgacgccagccgccttgctgcaagc
ggccttcatccggtactcgcccgcatctacgcagcccgtggcattcaggaaatacgtcag
ctcgaacacgagttgggcgccctgctcccttacacagacatgaaaaacatcggggaaatg
gcgcgcctgctggcggatgcgttagaggccgacaagcgtttactgatcatcgccgattac
gattccgatggcgccacggcctgcaccgtggcaatgcgtggcctgcgcgaattcggcgca
acagtagactacctcgtcccgaatcgcttcgaatacggctatgggttgacgccagaaatc
gttcagttagcggaggcacgcaagcccgacatcctcattactgtagacaacggcatcagc
agcgtagctggggtcgaagaggccaaccgactgggcatgcaggtgctggtcaccgaccac
catctgcctggcgacgagttgccggatgccgcctgcatcgtcaacccgaaccagcctgga
tgcgactttcccagcaagaacctggccggcgtgggcgtcatcttctacgtcatgctggcg
ttacgtgcagagttgaggaatcggggagcgtacaccaccaagcccgaacccaatctggcc
aggctgctcgatctggtagcgctaggcacggtggctgacgtggtgaaactggacgataac
aaccgcatcctggtgcaccagggactcaagcgcatctgtgccggtcgagcctgctcaggc
atcaatgcattactgaaagtagccagtagaaaagctgaaaaagcttcgacttacgacctc
ggttttgtcgtcggcccccgcctgaatgctgccggacgcctggatgacatggcgctggga
atcgaatgcctgctcaccgaaaacgaggaacaagcttactccatagcgcaacagctcgac
accctcaaccgcgagcggcgcgaaatcgaggcggacatgcaggaacaagctctagccgcg
ctggagcaggttgaggtgagtgaaaaccactcgctcagcctgtacgacccgaactggcac
cagggcgtgatcggcatccttgcctctcgactcaaggacaaataccatcgcccggtgatc
gccttcgcccgtagcaacaacggcgagttaaaaggctccggccgatctatccgcggcctg
cacctgcgcgatgcactcgacctggtcgccaaacggaaaccccacctgctgcaaaaattc
ggcggtcacgccttcgccgccgggttgaccatccaggaaaatcatttcgaggaattcacc
gccgctttcgaagaaatcgcccagtccctgctcaccccggccgacctggaacgcatcatc
gaaagcgacggcagtctggaaaccccagccatgaatctgcatctggccaaaaccctgacg
gagcaggtatgggggcagggctttccgcaaccggctttccaggagaaatttgcagttaaa
agccagcgggtagtaggcgaaaaacacttgcgactcaagctcggcaaggccgaccaggtt
ttcgacggcatcctgttttttcacaatgagccgctgcctgactggatcaacgctgtttac
cggctggacgtgaacgaatacaacggctcccaaagcctgcaattgatgatcgaatattgg
gaagaagccagtaaagggtaa
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