Sulfuricella denitrificans: SCD_n01841
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Entry
SCD_n01841 CDS
T02857
Symbol
rimO
Name
(GenBank) hypothetical protein
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sdr
Sulfuricella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdr03009
]
SCD_n01841 (rimO)
Enzymes [BR:
sdr01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
SCD_n01841 (rimO)
Ribosome biogenesis [BR:
sdr03009
]
Prokaryotic type
ribosomal protein modification factors
SCD_n01841 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAM_2
Radical_SAM
UPF0004
TRAM
YajR_YAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
BAN35652
UniProt:
S6B510
LinkDB
All DBs
Position
complement(1861092..1862408)
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AA seq
438 aa
AA seq
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MASIPKVGFVSLGCPKALVDSEQILTRLRAEGYAISPSYEGADLVVVNTCGFIDAAVAES
LDAIGEALKENGKVIVTGCLGAKSDVVLAAHPQVLAVTGPHAAAEVMAAVHQHLPQPHDP
FESLIPPQGIKLTPKHYAYLKISEGCNHRCTFCIIPSLRGDLVSRPVGEVMQEAENLVKA
GVKELLVISQDTSAYGVDVKYRSGFWGGRPLRTRMTELTSALGELGVWVRLHYVYPYPHV
DEVIPLMAEGKILPYLDVPLQHASPRILKAMKRPGNIEGTLARIHGWRDVCPEITIRSTF
IAGFPGETESDFELLLDFLREAQLDRVGCFAYSPVEGATANALPGAVPEEVKQERVARLM
ELQEEISAAKLGRKIGQTFTVLVDEVDEEGAVARSAADAPEIDGLVYIEEAGNLKLGDFV
DVEITDADAHDLWGRRVS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaattccaaaagtcggcttcgtttccctcggttgccccaaggcgctggtggat
tcggagcagatcctcacccgtttgcgtgccgagggttatgctatttcgcccagctatgag
ggggccgacctggtggtggtcaacacctgtggcttcatcgatgctgctgttgccgagtcg
ctcgatgccatcggcgaggcactcaaggagaacggcaaggtgatcgttaccggctgtctc
ggcgccaagtccgacgtggtgctggcggcgcatccccaggtgttggcggtgaccggcccg
cacgctgcagccgaggtgatggcggccgtgcaccagcacctgccgcagccgcacgaccca
ttcgaaagcctgatcccgccccaaggcatcaagctcacgccgaagcattacgcctacctg
aagatttccgagggctgcaaccaccgctgcactttctgcatcatcccgtcgctgcgcggt
gatttggtcagtcggccggtgggggaagtgatgcaggaagcggaaaacttggtcaaggcc
ggcgtcaaggaactgctggtgatctcgcaggacaccagcgcctacggcgtcgacgtcaaa
taccgcagcggtttctggggcggtcgcccgctccgcacccggatgaccgaactgacaagc
gctctaggcgaactgggcgtgtgggtgcggctgcattacgtctacccttatccgcatgtt
gacgaggtcattccgctgatggccgagggcaagatcctgccctacctggatgtgcctctc
cagcacgccagcccgcgcattctcaaggcgatgaagcgccctggaaatatcgagggcacg
ctggcccggattcatggctggcgcgacgtgtgcccggagatcacgatacgcagcaccttc
atcgccggttttcctggcgagaccgagtccgatttcgaactgctactggactttctgcgc
gaggcgcagcttgaccgcgttggctgctttgcctactcgccggtggaaggggcaacagcc
aacgcgctgcccggtgcagtgccggaagaggtgaaacaggagcgtgtggcacgtctgatg
gaactgcaggaagaaatcagcgcagccaaactggggcgcaaaatcggccagaccttcacc
gtgctggtggacgaagtggacgaggagggcgcggtcgcccgcagtgccgcggatgcgccg
gaaatcgacggtttggtctatatcgaggaggcgggcaacctgaaacttggtgatttcgtc
gatgtggaaatcactgacgccgatgcccacgatttgtgggggcggcgcgtcagttga
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