Sulfuricella denitrificans: SCD_n02229
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Entry
SCD_n02229 CDS
T02857
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sdr
Sulfuricella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdr03019
]
SCD_n02229
Enzymes [BR:
sdr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SCD_n02229
Messenger RNA biogenesis [BR:
sdr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SCD_n02229
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND_NTPase5
NACHT
APHB_HrpA
nSTAND3
Cap17-like_N
T2SSE
ABC_tran
SRP54
ResIII
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BAN36037
UniProt:
S6B6A0
LinkDB
All DBs
Position
2261092..2265018
Genome browser
AA seq
1308 aa
AA seq
DB search
MISDRHAFRRQLDKLRALATANKPMDAPLQQLQGAVERSAGRLKQRLERLPVPTYPEELP
VSGKRADIAAAIAANQVVIVCGETGSGKTTQLPKICLELQRGAAGLIGHTQPRRIAARTV
ASRISQELKSPLGQIVGYKVRFSDHTSADSYVKLMTDGILLAETQNDRFLSAYDTIIIDE
AHERSLNIDFLLGYLKQILPKRPDLKVIVTSATIDAERFSNHFDGAPVIEVSGRLYPVEM
RYRPLHQRKNEAGKIEDDISEANIEEAILDAVDEVSRTGSGDILIFLPGEREIRDTAEAL
RKHHPAGSEILPLFARLSAAEQERVFKPGGARRIVLATNVAETSLTVPGIRYVIDPGYAR
LLRYSYRSKVERLQVEKISQASANQRAGRCGRVMSGVCVRLYAEEDFNTRPAFTDPEIRR
SNLAAVILRMKALGLADIEDFPFLEPPDSRAIVDGFKLLEELGAVDAQRALTETGRQLAK
FPIDPRIARMILAAKAENCLTEVLIIASALSVQDPRDRPMDRQQAADDKHRQFQDDNSDF
VAYIKLWAFYDEALKHKKSNRKLLDLCREHFLSATRLREWREIHGQLHAQVVEIGLRPNQ
TPASYEEIHRALLAGLLGNLGVKTESQEYAGAREIKFHLFPGSVIFKKAPKWVMAAELTE
TTKLYARCAAKIEPEWVEKVAVDLLRRHYFDPHWEKTTAQVAAYERVSLYGLTLVPRRRV
HYGTINPIESRDIFIKGALVAGEFNTRAPFFEHNRKLVAEVEELEHKSRRQDVLVDEERI
YAFYDARIPEGIHNGADFDKWRRGAEAQDKRLLFMNKDDLMRHGADAVTVELFPETLMIG
ETACRLAYRFEPGHPLDGVTLSVPLHLLNQMDAKRFDWLVPGMIREKLTVLVKGLPKRLR
SACVPVPDFVTAALMEILPSPQPSPIKGERAITPSPLAGEGWGEGESRVLSEALAVFLRK
KTGQEIPPDTWKEADLPLYLRMNFKVVDESGAEMASGRDLAALKENLGQAARLTFASAPE
LDIEKEGLTNWDFGDLPEKIAFTRHGQSLTGYPALEDDGDSVSIRLFDTPEAAESAMRAG
VRRLLRLALNPQMKQLEKSLPGFTQTAILLRSVANPDDLKEDLLTAITDRAFLGDDELPR
TTKDFATQKDRARTRLAAVSDGACRILATIATDYQAIQARLAAKPPGNIAADIREQLVNL
VYKGFLNATPWEQLQHLPRYLKATVRRLEKLSGAVERDAKYTVAIRALWQDHQKRLEKHR
KEGISDPELHKFRWMMEELRVSMFAQELKTPYPVSVKRLQKAWEGVKA
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgatctcagaccgccacgctttccggcggcaactggacaagctgcgcgcactggccacc
gccaacaagcccatggacgccccgctacagcaactgcaaggcgcagtggagcgctctgcc
gggaggctgaaacaaaggctggagcggctacccgtccccacctatcctgaagagctgccg
gtctcgggcaaacgggcggacatcgccgccgccatcgccgccaaccaggtggtcatcgtt
tgcggcgaaaccggctcgggcaagaccacccagctgccgaaaatctgcctggaactccaa
cgcggagcagccggcctgatcggccacacccagccgcgacgcatcgccgcccgcaccgtg
gcttcgcgcatctcgcaggaactgaaaagcccgctcggccagatcgtcggctacaaagta
cgcttttccgaccataccagcgcagacagctacgtcaagctgatgaccgacggcatcctg
cttgcggaaacacagaacgaccgtttcctttccgcctacgacaccatcatcatcgacgag
gcgcacgagcgcagcctcaacatcgacttcctcctcggttacctgaagcagattctgccc
aagcgtcccgacctgaaagtcatcgtcacctcggccaccatcgacgcggagcggttttca
aatcacttcgacggcgccccggtgattgaagtttccggtcggctgtatccggttgaaatg
cgctaccgaccgctgcaccagcgcaagaacgaggccgggaaaattgaagacgatattagc
gaagcgaatatcgaggaagccatcctcgatgcagtggatgaagtttcacgcaccggttcc
ggcgatatcctgatcttcctccccggcgaacgcgaaatccgcgacactgctgaagcctta
cgcaagcaccatccggcaggcagcgaaatcctgccgctgttcgcccgcctttctgccgcc
gagcaggaacgcgtgttcaagcccggcggagcacgccgcatcgtgctcgccaccaacgtg
gcggagacctcgctcaccgtgcccggcattcgctacgtcatcgaccccggttacgcccgc
ctgctacgttacagctaccgttccaaggtggagcgattgcaggtcgaaaaaatctcccag
gcctcggccaaccagcgcgccggtcgttgcggccgggtgatgagcggggtgtgcgtgcga
ctgtacgcggaggaggatttcaacacccgccccgccttcaccgacccggaaatccgccgc
agcaacctcgccgccgtgatcctgcggatgaaggcattgggcctggccgacatcgaggat
ttcccgttcctcgaaccgcccgactcgcgcgccatcgtcgacggcttcaagctgctggaa
gaacttggcgcggtggacgcgcagcgcgcgctgaccgaaaccggccgccagctcgccaaa
ttcccgatcgacccgcgcatcgcccgcatgatcctcgcagccaaggcggaaaactgtctg
accgaagtgctgatcatcgcctccgcgctttccgtgcaggacccgcgcgaccgaccgatg
gaccgccagcaggcagcggacgacaagcaccgccagttccaggacgacaactccgacttc
gttgcctacatcaagctgtgggcgttctacgacgaggcgctgaagcacaagaaatccaac
cgcaagctgctcgacctgtgccgcgagcatttcctctccgccacgcgtttgcgcgagtgg
cgcgagatccacggccagctccacgcccaagtggtggagatcggcctgcgcccgaaccag
accccggccagttatgaggaaattcatcgcgcattattggccggcctgctcggcaacctc
ggcgtcaagaccgaaagccaggaatatgccggggcgcgggaaatcaagttccacctcttt
cccggttcggtgattttcaagaaagcgccgaaatgggtgatggcggcggagctgaccgaa
accaccaagctctacgcccgctgcgccgccaaaatcgaaccggaatgggtggaaaaggtc
gccgtcgatctgctgcgccgccactatttcgatccccactgggaaaagaccaccgcccag
gtcgccgcctacgaacgcgtcagcctgtacggtctgacgctggtgccgcgtcgccgcgtc
cactacggcacgatcaacccgatcgagtcgcgcgacatctttatcaagggcgcgctggta
gcgggtgaatttaatacccgtgccccgttcttcgaacacaaccgcaagcttgtcgccgaa
gtcgaagaactggagcacaagtcgcgccgccaggacgtgctggtggacgaggagcgcatt
tacgccttctacgatgcccgcatcccggagggcatccacaacggcgcggatttcgacaaa
tggcggcgcggtgctgaagcccaggataagcgcctgctgttcatgaacaaggacgacctg
atgcgccacggcgccgatgccgtcaccgtcgagctgttccctgaaaccctgatgatcggc
gaaacagcctgccgcctcgcctaccgtttcgaacccggccacccgctcgacggcgtcacc
ctctccgtgccgctgcaccttttgaaccagatggacgccaagcgcttcgactggctggtg
ccgggcatgatccgcgagaagctcaccgtgctggtcaaaggattgcccaagcggttgcgt
agcgcctgcgtgccggtgccggattttgtcaccgctgcattgatggaaatattaccctct
ccccaaccctctcccatcaagggagagagggccattactccctcccccctcgcgggggag
ggctggggagagggggaaagccgtgtcctctccgaagccctcgccgtcttcctgcgcaaa
aaaaccggccaggaaatcccgcccgacacctggaaggaagccgacctgccgctgtacctg
cgcatgaacttcaaggtagttgacgagtccggcgccgagatggcctccggccgcgacctc
gccgcgctcaaggaaaatctcggccaggccgcacgcctcaccttcgccagcgcgccggaa
ctcgacatcgaaaaggaaggactaaccaactgggatttcggcgacctgccggaaaagatc
gccttcacccgccatggacaatctctcaccggctacccggcgctggaggacgacggcgac
tcggtctcgatccgcttgttcgacacccccgaagcggcggaatccgccatgcgtgccggt
gtgcgccgattgctgcggctcgcccttaacccgcagatgaagcaactggaaaagagcctg
cccggtttcacccagaccgctatcctgctgcgttccgtcgccaaccccgacgacctgaaa
gaagacctgctcaccgccatcaccgaccgcgccttcctcggcgacgacgaactgccccgc
accaccaaggacttcgccacacaaaaggaccgcgcccgcacccgcctcgctgccgtctcg
gacggagcatgccgtatcctcgccaccatcgccaccgactaccaggcgatacaggccagg
ctcgctgccaaaccgcccggcaatatcgccgccgacatccgcgagcaactcgtcaacctg
gtctacaagggctttctcaacgccaccccgtgggaacagttgcagcacctgccacgctac
ctcaaggccaccgtgcgccgactggaaaaactctccggtgcggttgagcgcgacgccaaa
tacactgttgccatccgggcgctatggcaggatcatcagaagcggctggaaaagcaccgc
aaggaagggattagcgacccggaactacacaagtttcgctggatgatggaagagttgcgg
gtgtcgatgtttgcgcaggaactgaagacgccttatccggtatcagtcaaaaggctgcaa
aaagcatgggaaggggtgaaggcgtaa
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